IEEE/ACM Transactions on Computational Biology and Bioinformatics

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) is a bimonthly journal that publishes archival research results related to the algorithmic, mathematical, statistical, and computational methods that are central in bioinformatics and computational biology. Read the full scope of TCBB


Expand your horizons with Colloquium, a monthly survey of abstracts from all CS transactions! Replaces OnlinePlus in January 2017.


From the September/October 2017 Issue

Exploring Consensus RNA Substructural Patterns Using Subgraph Mining

By Qingfeng Chen, Chaowang Lan, Baoshan Chen, Lusheng Wang, Jinyan Li, and Chengqi Zhang

Featured article thumbnail imageFrequently recurring RNA structural motifs play important roles in RNA folding process and interaction with other molecules. Traditional index-based and shape-based schemas are useful in modeling RNA secondary structures but ignore the structural discrepancy of individual RNA family member. Further, the in-depth analysis of underlying substructure pattern is insufficient due to varied and unnormalized substructure data. This prevents us from understanding RNAs functions and their inherent synergistic regulation networks. This article thus proposes a novel labeled graph-based algorithm RnaGraph to uncover frequently RNA substructure patterns. Attribute data and graph data are combined to characterize diverse substructures and their correlations, respectively. Further, a top-k graph pattern mining algorithm is developed to extract interesting substructure motifs by integrating frequency and similarity. The experimental results show that our methods assist in not only modelling complex RNA secondary structures but also identifying hidden but interesting RNA substructure patterns.

download PDF View the PDF of this article      csdl View this issue in the digital library


Editorials and Announcements

Announcements

  • We are pleased to announce that Aidong Zhang, the SUNY Distinguished Professor in the Department of Computer Science and Engineering at the University at Buffalo, The State University of New York, has been named the new Editor-in-Chief of the IEEE/ACM Transactions on Computational Biology and Bioinformatics starting in 2017.

Editorials


Guest Editorials


Reviewers List


Author Index


Access Recently Published TCBB Articles

RSS Subscribe to the RSS feed of recently published TCBB content

mail icon Sign up for e-mail notifications through IEEE Xplore Content Alerts

preprints icon View TCBB preprints in the Computer Society Digital Library


TCBB is a joint publication of the IEEE Computer Society, Association for Computing Machinery, IEEE Computational Intelligence Society, and the IEEE Engineering in Medicine and Biology Society.

IEEE Computer Society    ACM    Engineering in Medicine and Biology Society

Published in cooperation with: IEEE Control Systems Society


MEDLINE      PubMed

Indexed in MEDLINE®/PubMed® & ISI