IEEE/ACM Transactions on Computational Biology and Bioinformatics

IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) is a bimonthly journal that publishes archival research results related to the algorithmic, mathematical, statistical, and computational methods that are central in bioinformatics and computational biology. Read the full scope of TCBB


TCBB seeks editor in chief for 2017-2018 term

The IEEE Computer Society, IEEE Engineering in Medicine and Biology Society, and Association for Computing Machinery seek applicants for the position of editor in chief of the IEEE Transactions on Computational Biology and Bioinformatics, serving a two-year term starting 1 January 2017, renewable once. Please view the EIC Search Ad for more information or contact Kimberly Sperka, ksperka@computer.org.


IEEE Transactions on Computational Biology and Bioinformatics (TCBB) moved to the OnlinePlus publication model starting with 2015 issues!


From the November/December 2015 Issue

BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model

By Beichen Wang, Xiaodong Chen, Hiroshi Mamitsuka, and Shanfeng Zhu

Featured article thumbnail imageWith the rapid development of biomedical sciences, a great number of documents have been published to report new scientific findings and advance the process of knowledge discovery. By the end of 2013, the largest biomedical literature database, MEDLINE, has indexed over 23 million abstracts. It is thus not easy for scientific professionals to find experts on a certain topic in the biomedical domain. In contrast to the existing services that use some ad hoc approaches, we developed a novel solution to biomedical expert finding, BMExpert, based on the language model. For finding biomedical experts, who are the most relevant to a specific topic query, BMExpert mines MEDLINE documents by considering three important factors: relevance of documents to the query topic, importance of documents, and associations between documents and experts. The performance of BMExpert was evaluated on a benchmark dataset, which was built by collecting the program committee members of ISMB in the past three years (2012-2014) on 14 different topics. Experimental results show that BMExpert outperformed three existing biomedical expert finding services: JANE, GoPubMed, and eTBLAST, with respect to both MAP (mean average precision) and P@50 (Precision). BMExpert is freely accessed at http://datamining-iip.fudan.edu.cn/service/BMExpert/.

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TCBB is a joint publication of the IEEE Computer Society, Association for Computing Machinery, IEEE Computational Intelligence Society, and the IEEE Engineering in Medicine and Biology Society.

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Published in cooperation with: IEEE Control Systems Society


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