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TABLE OF CONTENTS
Issue No. 05 - Sept.-Oct. (vol. 11)
ISSN: 1545-5963

Table of Contents (PDF)

pp. C1

Guest Editorial for Special Section on BIOKDD2013 (HTML)

Gaurav Pandey , Department of Genetics and Genomic Science and the Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY
Huzefa Rangwala , Department of Computer Science, George Mason University, Fairfax, VA
pp. 773-774

Reliable Radiation Hybrid Maps: An Efficient Scalable Clustering-Based Approach (Abstract)

Raed I. Seetan , Department of Computer Science, North Dakota State University, Fargo, ND
Anne M. Denton , Department of Computer Science, North Dakota State University, Fargo, ND
Omar Al-Azzam , Math, Science and Technology Department, University of Minnesota, Crookston, MN
Ajay Kumar , Department of Plant Sciences, North Dakota State University, Fargo, ND
M. Javed Iqbal , Department of Plant Sciences, University of California, Davis, CA
Shahryar F. Kianian , USDA-ARS Cereal Disease Laboratory, University of Minnesota, St. Paul, MN
pp. 788-800

LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification (Abstract)

Joana P. Gonçalves , Centrum Wiskunde & Inf., Amsterdam, Netherlands
Sara C. Madeira , Inst. Super. Tecnico, Univ. of Lisbon, Lisbon, Portugal
pp. 801-813

Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures (Abstract)

Cheng Zhou , Dept. of Math. & Comput. Sci., Univ. of Antwerp, Antwerp, Belgium
Pieter Meysman , Dept. of Math. & Comput. Sci., Univ. of Antwerp, Antwerp, Belgium
Boris Cule , Dept. of Math. & Comput. Sci., Univ. of Antwerp, Antwerp, Belgium
Kris Laukens , Dept. of Math. & Comput. Sci., Univ. of Antwerp, Antwerp, Belgium
Bart Goethals , Dept. of Math. & Comput. Sci., Univ. of Antwerp, Antwerp, Belgium
pp. 814-825

acc-Motif: Accelerated Network Motif Detection (Abstract)

Luis A. A. Meira , School of Technology, University of Campinas (UNICAMP), Campinas, , Brazil
Vinicius R. Maximo , Institute of Science and Technology, Federal University of São Paulo (UNIFESP), São José dos Campos, Brazil
Alvaro L. Fazenda , Institute of Science and Technology, Federal University of São Paulo (UNIFESP), São José dos Campos, Brazil
Arlindo Flavio da Conceicao , Institute of Science and Technology, Federal University of São Paulo (UNIFESP), São José dos Campos, Brazil
pp. 853-862

Building Specific Signals from Frequency Chaos Game and Revealing Periodicities Using a Smoothed Fourier Analysis (Abstract)

Imen Messaoudi , Electrical Engineering Department, National Engineering School of Tunis, Tunisia
Afef Elloumi-Oueslati , Electrical Engineering Department, National Engineering School of Tunis, Tunisia
Zied Lachiri , Physics and Instrumentation Department, National Institute of Applied Sciences and Technology, Tunisia
pp. 863-877

Genome-Wide Protein Function Prediction through Multi-Instance Multi-Label Learning (Abstract)

Jian-Sheng Wu , National Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China
Sheng-Jun Huang , National Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China
Zhi-Hua Zhou , National Key Laboratory for Novel Software Technology, Nanjing University, Nanjing, China
pp. 891-902

iNJclust: Iterative Neighbor-Joining Tree Clustering Framework for Inferring Population Structure (Abstract)

Tulaya Limpiti , Faculty of Engineering, King Mongkut¿s Institute of Technology Ladkrabang (KMITL), Bangkok, , Thailand
Chainarong Amornbunchornvej , Faculty of Engineering, King Mongkut¿s Institute of Technology Ladkrabang (KMITL), Bangkok, , Thailand
Apichart Intarapanich , , National Electronics and Computer Technology Center (NECTEC), Klongluang, Pathumthani, Thailand
Anunchai Assawamakin , Department of Pharmacology, Faculty of Pharmacy, Mahidol University, Rajathevi, Bangkok, Thailand
Sissades Tongsima , , National Center for Genetic Engineering and Biotechnology (BIOTEC), Klongluang, Pathumthani, Thailand
pp. 903-914

Mining Conditional Phosphorylation Motifs (Abstract)

Xiaoqing Liu , School of Software, Dalian University of Technology, Dalian, China
Jun Wu , School of Software, Dalian University of Technology, Dalian, China
Haipeng Gong , School of Software, Dalian University of Technology, Dalian, China
Shengchun Deng , School of Computer Science and Engineering, Harbin Institute of Technology, Harbin, China
Zengyou He , School of Software, Dalian University of Technology, Dalian, China
pp. 915-927

Perfect Phylogeny Problems with Missing Values (Abstract)

Bonnie Kirkpatrick , Dept. of Comput. Sci., Univ. of Miami, Coral Gables, FL, USA
Kristian Stevens , Univ. of California-Davis, Davis, CA, USA
pp. 928-941

Similarity Measures for Comparing Biclusterings (Abstract)

Danilo Horta , Instituto de Ciências Matemáticas e de Computação ¿ ICMC., Universidade de São Paulo ¿ Campus de São Carlos., Caixa Postal 668,, São Carlos-SP, Brazil
Ricardo J.G.B. Campello , Instituto de Ciências Matemáticas e de Computação ¿ ICMC., Universidade de São Paulo ¿ Campus de São Carlos., Caixa Postal 668,, São Carlos-SP, Brazil
pp. 942-954

Study of the Paired Change Points in Bacterial Genes (Abstract)

Yulia M. Suvorova , Bioinformatics Laboratory, Centre of Bioengineering Russian Academy of Sciences, 117312, prospect 60 tya Oktyabrya 7/1, Moscow, Russian Federation
Maria A. Korotkova , Department of Cybernetics, National Nuclear Investigational University (MIFI), 115522, Kashirskoe Shosse, 31, Moscow, Russian Federation
Eugene V. Korotkov , Bioinformatics Laboratory, Centre of Bioengineering Russian Academy of Sciences, 117312, prospect 60-tya Oktyabrya 7/1, Moscow
pp. 955-964

Synchronization of Boolean Networks with Different Update Schemes (Abstract)

Hao Zhang , Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian, China
Xingyuan Wang , Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian, China
Xiaohui Lin , Faculty of Electronic Information and Electrical Engineering, Dalian University of Technology, Dalian, China
pp. 965-972

RNA-Seq Analysis Pipeline Based on Oshell Environment (Abstract)

Jing Li , Division of Bioinformatics, Omicsoft Corporation, 200 Cascade Pointe Lane, Suite 101, Cary, NC
Jun Hu , Bioinformatics Research Center, North Carolina State University, Ricks Hall, 1 Lampe Dr., Raleigh, NC
Matthew Newman , Division of Bioinformatics, Omicsoft Corporation, 200 Cascade Pointe Lane, Suite 101, Cary, NC
Kejun Liu , Division of Bioinformatics, Omicsoft Corporation, 200 Cascade Pointe Lane, Suite 101, Cary, NC
Huanying Ge , Division of Bioinformatics, Omicsoft Corporation, 200 Cascade Pointe Lane, Suite 101, Cary, NC
pp. 973-978

Table of Contents (PDF)

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