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TABLE OF CONTENTS
Issue No. 01 - Jan.-Feb. (vol. 11)
ISSN: 1545-5963

Front Cover (PDF)

pp. C1

Guest Editorial for the International Conference on Genome Informatics (GIW 2013) (PDF)

Frank Eisenhaber , Bioinformatics Institute, Agency for Science, Technology and Research, 30 Biopolis Street #07-01, Matrix,
Wing-Kin Sung , School of Computing, National University of Singapore, 13 Computing Drive,
Limsoon Wong , School of Computing, National University of Singapore, 13 Computing Drive,
pp. 5-6

Coupling Graphs, Efficient Algorithms and B-Cell Epitope Prediction (Abstract)

Liang Zhao , Dept. of Pediatrics, Baylor Coll. of Med., Houston, TX, USA
Steven C. H. Hoi , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Zhenhua Li , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Limsoon Wong , Sch. of Comput., Nat. Univ. of Singapore, Singapore, Singapore
Hung Nguyen , Center for Health Technol., Univ. of Technol. Sydney, Sydney, NSW, Australia
Jinyan Li , Adv. Analytics Inst., Univ. of Technol. Sydney, Sydney, NSW, Australia
pp. 7-16

Quantifying Significance of MHC II Residues (Abstract)

Ying Fan , Dept. of Comput. Sci., City Univ. of Hong Kong, Kowloon, China
Ruoshui Lu , Dept. of Comput. Sci., City Univ. of Hong Kong, Kowloon, China
Lusheng Wang , Dept. of Comput. Sci., City Univ. of Hong Kong, Kowloon, China
Massimo Andreatta , Dept. of Math., City Univ. of Hong Kong, Kowloon, China
Shuai Cheng Li , Dept. of Comput. Sci., City Univ. of Hong Kong, Kowloon, China
pp. 17-25

A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting (Abstract)

Ruiqi Liao , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
Ruichang Zhang , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
Jihong Guan , Dept. of Comput. Sci. & Technol., Tongji Univ., Shanghai, China
Shuigeng Zhou , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
pp. 42-54

Gene Name Disambiguation Using Multi-Scope Species Detection (Abstract)

Jui-Chen Hsiao , Inst. of Med. Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
Chih-Hsuan Wei , Inst. of Comput. Sci. & Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
Hung-Yu Kao , Inst. of Comput. Sci. & Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
pp. 55-62

Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte Carlo (Abstract)

Jing Guo , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Ritika Jain , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Peng Yang , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Rui Fan , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Chee Keong Kwoh , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Jie Zheng , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
pp. 63-72

Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields (Abstract)

Yanglan Gan , Sch. of Comput. Sci. & Technol., Donghua Univ., Shanghai, China
Jihong Guan , Dept. of Comput. Sci. & Technol., Tongji Univ., Shanghai, China
Shuigeng Zhou , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
Weixiong Zhang , Inst. for Syst. Biol., Jianghan Univ., Wuhan, China
pp. 73-82

Evolution and Controllability of Cancer Networks: A Boolean Perspective (Abstract)

Sriganesh Srihari , Inst. for Mol. Biosci., Univ. of Queensland, St. Lucia, QLD, Australia
Venkatesh Raman , Inst. of Math. Sci., Chennai, India
Hon Wai Leong , Dept. of Comput. Sci., Nat. Univ. of Singapore, Singapore, Singapore
Mark A. Ragan , Inst. for Mol. Biosci., Univ. of Queensland, St. Lucia, QLD, Australia
pp. 83-94

A New Path Based Hybrid Measure for Gene Ontology Similarity (Abstract)

Sanghamitra Bandyopadhyay , Machine Intell. Unit, Indian Stat. Inst., Kolkata, India
Koushik Mallick , CSE Dept., RCC Inst. of Inf. Technol., Kolkata, India
pp. 116-127

Detecting Differentially Coexpressed Genes from Labeled Expression Data: A Brief Review (Abstract)

Mitsunori Kayano , Dept. of Animal & Food Hygiene, Obihiro Univ. of Agric. & Veterinary Med., Obihiro, Japan
Motoki Shiga , Dept. of Electr., Electron. & Comput. Eng., Gifu Univ., Gifu, Japan
Hiroshi Mamitsuka , Bioinf. Center, Kyoto Univ., Uji, Japan
pp. 154-167

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set (Abstract)

Leyi Wei , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
Minghong Liao , Sch. of Software, Xiamen Univ., Xiamen, China
Yue Gao , Sch. of Comput., Nat. Univ. of Singapore, Singapore, Singapore
Rongrong Ji , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
Zengyou He , Sch. of Software, Dalian Univ. of Technol., Dalian, China
Quan Zou , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
pp. 192-201

HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model (Abstract)

Sandhya Prabhakaran , Dept. of Math. & Comput. Sci., Univ. of Basel, Basel, Switzerland
Melanie Rey , Dept. of Math. & Comput. Sci., Univ. of Basel, Basel, Switzerland
Osvaldo Zagordi , Inst. of Med. Virology, Univ. of Zurich, Zurich, Switzerland
Niko Beerenwinkel , Dept. of Biosyst. Sci. & Eng., ETH Zurich, Basel, Switzerland
Volker Roth , Dept. of Math. & Comput. Sci., Univ. of Basel, Basel, Switzerland
pp. 182-191

Local Exact Pattern Matching for Non-Fixed RNA Structures (Abstract)

Mika Amit , Dept. of Comput. Sci., Univ. of Haifa, Haifa, Israel
Rolf Backofen , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Steffen Heyne , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Gad M. Landau , Dept. of Comput. Sci., Univ. of Haifa, Haifa, Israel
Mathias Mohl , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Christina Otto , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Sebastian Will , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
pp. 219-230

Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization (Abstract)

Jun Sun , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
Vasile Palade , Fac. of Eng. & Comput., Coventry Univ., Coventry, UK
Xiaojun Wu , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
Wei Fang , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
pp. 243-257

Maximizing Deep Coalescence Cost (Abstract)

Pawel Gorecki , Dept. of Math., Inf. & Mech., Univ. of Warsaw, Warsaw, Poland
Oliver Eulenstein , Dept. of Comput. Sci., Iowa State Univ., Ames, IA, USA
pp. 231-242

2013 Reviewers List* (PDF)

pp. 266-269

Erratum to “Protein Function Prediction Using Multilabel Ensemble Classification” (PDF)

Guoxian Yu , College of Computer and Information Science, SouthwestUniversity, No. 2 Tiansheng Road, Beibei, Chongqing, China
Huzefa Rangwala , Department of Computer Science, George Mason University, 4400 University Drive, Fairfax,
Carlotta Domeniconi , Department of Computer Science, George Mason University, 4400 University Drive, Fairfax,
Guoji Zhang , School of Sciences, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou, China
Zhiwen Yu , School of Computer Science and Engineering, South ChinaUniversity of Technology, Guangzhou Higher Education Mega Center, Guangzhou, China
pp. 265

Open Access (PDF)

pp. 292

Table of Contents (PDF)

pp. C3

Table of Contents (PDF)

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