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TABLE OF CONTENTS
Issue No. 01 - Jan.-Feb. (vol. 11)
ISSN: 1545-5963

Front Cover (PDF)

pp. C1

Guest Editorial for the International Conference on Genome Informatics (GIW 2013) (PDF)

Frank Eisenhaber , Bioinformatics Institute, Agency for Science, Technology and Research, 30 Biopolis Street #07-01, Matrix,
Wing-Kin Sung , School of Computing, National University of Singapore, 13 Computing Drive,
Limsoon Wong , School of Computing, National University of Singapore, 13 Computing Drive,
pp. 5-6

Coupling Graphs, Efficient Algorithms and B-Cell Epitope Prediction (Abstract)

Liang Zhao , Dept. of Pediatrics, Baylor Coll. of Med., Houston, TX, USA
Steven C. H. Hoi , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Zhenhua Li , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Limsoon Wong , Sch. of Comput., Nat. Univ. of Singapore, Singapore, Singapore
Hung Nguyen , Center for Health Technol., Univ. of Technol. Sydney, Sydney, NSW, Australia
Jinyan Li , Adv. Analytics Inst., Univ. of Technol. Sydney, Sydney, NSW, Australia
pp. 7-16

Residue-Specific Side-Chain Polymorphisms via Particle Belief Propagation (Abstract)

Laleh Soltan Ghoraie , Cheriton Sch. of Comput. Sci., Univ. of Waterloo, Waterloo, ON, Canada
Forbes Burkowski , Cheriton Sch. of Comput. Sci., Univ. of Waterloo, Waterloo, ON, Canada
Shuai Cheng Li , City Univ. of Hong Kong, Hong Kong, China
Mu Zhu , Dept. of Stat. & Actuarial Sci., Univ. of Waterloo, Waterloo, ON, Canada
pp. 33-41

A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting (Abstract)

Ruiqi Liao , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
Ruichang Zhang , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
Jihong Guan , Dept. of Comput. Sci. & Technol., Tongji Univ., Shanghai, China
Shuigeng Zhou , Shanghai Key Lab. of Intell. Inf. Process., Fudan Univ., Shanghai, China
pp. 42-54

Gene Name Disambiguation Using Multi-Scope Species Detection (Abstract)

Jui-Chen Hsiao , Inst. of Med. Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
Chih-Hsuan Wei , Inst. of Comput. Sci. & Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
Hung-Yu Kao , Inst. of Comput. Sci. & Inf., Nat. Cheng Kung Univ., Tainan, Taiwan
pp. 55-62

Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte Carlo (Abstract)

Jing Guo , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Ritika Jain , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Peng Yang , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Rui Fan , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Chee Keong Kwoh , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
Jie Zheng , Sch. of Comput. Eng., Nanyang Technol. Univ., Singapore, Singapore
pp. 63-72

A Survey and Comparative Study of Statistical Tests for Identifying Differential Expression from Microarray Data (Abstract)

Sanghamitra Bandyopadhyay , Machine Intell. Unit, Indian Stat. Inst., Kolkata, India
Saurav Mallik , Machine Intell. Unit, Indian Stat. Inst., Kolkata, India
Anirban Mukhopadhyay , Dept. of Comput. Sci. & Eng., Univ. of Kalyani, Kalyani, India
pp. 95-115

Evolution and Controllability of Cancer Networks: A Boolean Perspective (Abstract)

Sriganesh Srihari , Inst. for Mol. Biosci., Univ. of Queensland, St. Lucia, QLD, Australia
Venkatesh Raman , Inst. of Math. Sci., Chennai, India
Hon Wai Leong , Dept. of Comput. Sci., Nat. Univ. of Singapore, Singapore, Singapore
Mark A. Ragan , Inst. for Mol. Biosci., Univ. of Queensland, St. Lucia, QLD, Australia
pp. 83-94

$O$$(n\; {\rm lg}\; n)$ Time">Constructing a Gene Team Tree in Almost $O$$(n\; {\rm lg}\; n)$ Time (Abstract)

Biing-Feng Wang , Dept. of Comput. Sci., Nat. Tsing Hua Univ., Hsinchu, Taiwan
Chien-Hsin Lin , Dept. of Comput. Sci., Nat. Tsing Hua Univ., Hsinchu, Taiwan
I-Tse Yang , Dept. of Comput. Sci., Nat. Tsing Hua Univ., Hsinchu, Taiwan
pp. 142-153

Detecting Differentially Coexpressed Genes from Labeled Expression Data: A Brief Review (Abstract)

Mitsunori Kayano , Dept. of Animal & Food Hygiene, Obihiro Univ. of Agric. & Veterinary Med., Obihiro, Japan
Motoki Shiga , Dept. of Electr., Electron. & Comput. Eng., Gifu Univ., Gifu, Japan
Hiroshi Mamitsuka , Bioinf. Center, Kyoto Univ., Uji, Japan
pp. 154-167

Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set (Abstract)

Leyi Wei , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
Minghong Liao , Sch. of Software, Xiamen Univ., Xiamen, China
Yue Gao , Sch. of Comput., Nat. Univ. of Singapore, Singapore, Singapore
Rongrong Ji , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
Zengyou He , Sch. of Software, Dalian Univ. of Technol., Dalian, China
Quan Zou , Sch. of Inf. Sci. & Technol., Xiamen Univ., Xiamen, China
pp. 192-201

Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification (Abstract)

Mohammad Shahrokh Esfahani , Dept. of Electr. & Comput. Eng., Texas A&M Univ., College Station, TX, USA
Edward R. Dougherty , Dept. of Electr. & Comput. Eng., Texas A&M Univ., College Station, TX, USA
pp. 202-218

Local Exact Pattern Matching for Non-Fixed RNA Structures (Abstract)

Mika Amit , Dept. of Comput. Sci., Univ. of Haifa, Haifa, Israel
Rolf Backofen , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Steffen Heyne , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Gad M. Landau , Dept. of Comput. Sci., Univ. of Haifa, Haifa, Israel
Mathias Mohl , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Christina Otto , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
Sebastian Will , Inst. of Comput. Sci., Albert-Ludwigs-Univ., Freiburg, Germany
pp. 219-230

Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization (Abstract)

Jun Sun , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
Vasile Palade , Fac. of Eng. & Comput., Coventry Univ., Coventry, UK
Xiaojun Wu , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
Wei Fang , Key Lab. of Adv. Control for Light Ind. (Minist. of China), Jiangnan Univ., Wuxi, China
pp. 243-257

$k$-Mer Matching Using Fuzzy Hash Maps">Approximate $k$-Mer Matching Using Fuzzy Hash Maps (Abstract)

John Healy , Dept. of Comput. & Math., Galway-Mayo Inst. of Technol., Galway, Ireland
Desmond Chambers , Dept. of Inf. Technol., Nat. Univ. of Ireland Galway, Galway, Ireland
pp. 258-264

2013 Reviewers List* (PDF)

pp. 266-269

Erratum to “Protein Function Prediction Using Multilabel Ensemble Classification” (PDF)

Guoxian Yu , College of Computer and Information Science, SouthwestUniversity, No. 2 Tiansheng Road, Beibei, Chongqing, China
Huzefa Rangwala , Department of Computer Science, George Mason University, 4400 University Drive, Fairfax,
Carlotta Domeniconi , Department of Computer Science, George Mason University, 4400 University Drive, Fairfax,
Guoji Zhang , School of Sciences, South China University of Technology, Guangzhou Higher Education Mega Center, Guangzhou, China
Zhiwen Yu , School of Computer Science and Engineering, South ChinaUniversity of Technology, Guangzhou Higher Education Mega Center, Guangzhou, China
pp. 265

Open Access (PDF)

pp. 292

Table of Contents (PDF)

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Table of Contents (PDF)

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