The Community for Technology Leaders
Green Image
TABLE OF CONTENTS
Issue No. 06 - Nov.-Dec. (vol. 10)
ISSN: 1545-5963

[Front inside cover] (PDF)

pp. c2

Reconstruction of Transcriptional Regulatory Networks by Stability-Based Network Component Analysis (Abstract)

Xi Chen , Dept. of Electr. & Comput. Eng., Virginia Polytech. Inst. & State Univ., Arlington, VA, USA
Jianhua Xuan , Dept. of Electr. & Comput. Eng., Virginia Polytech. Inst. & State Univ., Arlington, VA, USA
Chen Wang , Dept. of Electr. & Comput. Eng., Virginia Polytech. Inst. & State Univ., Arlington, VA, USA
Ayesha N. Shajahan , Dept. of Oncology, Georgetown Univ. Med. Center, Washington, DC, USA
Rebecca B. Riggins , Dept. of Oncology, Georgetown Univ. Med. Center, Washington, DC, USA
Robert Clarke , Dept. of Oncology, Georgetown Univ. Med. Center, Washington, DC, USA
pp. 1347-1358

Network-Based Drug Ranking and Repositioning with Respect to DrugBank Therapeutic Categories (Abstract)

Matteo Re , Dipt. di Inf., Univ. degli Studi di Milano, Milan, Italy
Giorgio Valentini , Dipt. di Inf., Univ. degli Studi di Milano, Milan, Italy
pp. 1359-1371

Protein Chain Pair Simplification under the Discrete Fréchet Distance (Abstract)

Tim Wylie , Dept. of Comput. Sci., Montana State Univ., Bozeman, MT, USA
Binhai Zhu , Dept. of Comput. Sci., Montana State Univ., Bozeman, MT, USA
pp. 1372-1383

Inapproximability of (1,2)-Exemplar Distance (Abstract)

Laurent Bulteau , Lab. d'Inf. de Nantes-Atlantique (LINA), Univ. de Nantes, Nantes, France
Minghui Jiang , Dept. of Comput. Sci., Utah State Univ., Logan, UT, USA
pp. 1384-1390

An Integer Programming Formulation of the Parsimonious Loss of Heterozygosity Problem (Abstract)

Daniele Catanzaro , Comput. Sci. Dept., Univ. Libre de Bruxelles (ULB), Brussels, Belgium
Martine Labbe , Comput. Sci. Dept., Univ. Libre de Bruxelles (ULB), Brussels, Belgium
Bjarni V. Halldorsson , Dept. of Biomed. Eng., Reykjavk Univ., Reykjavik, Iceland
pp. 1391-1402

A Transcript Perspective on Evolution (Abstract)

Yann Christinat , EPFL, Lab. for Comput. Biol. & Bioinf., Lausanne, Switzerland
Bernard M. E. Moret , EPFL, Lab. for Comput. Biol. & Bioinf., Lausanne, Switzerland
pp. 1403-1411

Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins (Abstract)

Si Li , Dept. of Math., Nat. Univ. of Singapore, Singapore, Singapore
Kwok Pui Choi , Dept. of Math., Nat. Univ. of Singapore, Singapore, Singapore
Taoyang Wu , Sch. of Comput. Sci., Univ. of East Anglia, Norwich, UK
Louxin Zhang , Dept. of Math., Nat. Univ. of Singapore, Singapore, Singapore
pp. 1412-1421

Novel Multisample Scheme for Inferring Phylogenetic Markers from Whole Genome Tumor Profiles (Abstract)

Ayshwarya Subramanian , Dept. of Biol. Sci., Carnegie Mellon Univ., Pittsburgh, PA, USA
Stanley Shackney , Oncotherapeutics, Pittsburgh, PA, USA
Russell Schwartz , Dept. of Biol. Sci., Carnegie Mellon Univ., Pittsburgh, PA, USA
pp. 1422-1431

Efficient Algorithms for Knowledge-Enhanced Supertree and Supermatrix Phylogenetic Problems (Abstract)

Andre Wehe , Dept. of Biol., Univ. of Florida, Gainesville, FL, USA
J. Gordon Burleigh , Dept. of Comput. Sci., Iowa State Univ., Ames, IA, USA
Oliver Eulenstein , Dept. of Comput. Sci., Iowa State Univ., Ames, IA, USA
pp. 1432-1441

Wavelet Analysis in Current Cancer Genome Research: A Survey (Abstract)

Tao Meng , Dept. of Electr. & Comput. Eng., Univ. of Miami, Coral Gables, FL, USA
Ahmed T. Soliman , Dept. of Electr. & Comput. Eng., Univ. of Miami, Coral Gables, FL, USA
Mei-Ling Shyu , Dept. of Electr. & Comput. Eng., Univ. of Miami, Coral Gables, FL, USA
Yimin Yang , Sch. of Comput. & Inf. Sci., Florida Int. Univ., Miami, FL, USA
Shu-Ching Chen , Sch. of Comput. & Inf. Sci., Florida Int. Univ., Miami, FL, USA
S. S. Iyengar , Sch. of Comput. & Inf. Sci., Florida Int. Univ., Miami, FL, USA
John S. Yordy , Dept. of Radiat. Oncology, Univ. of Texas Southwestern Med. Center, Dallas, TX, USA
Puneeth Iyengar , Dept. of Radiat. Oncology, Univ. of Texas Southwestern Med. Center, Dallas, TX, USA
pp. 1442-14359

A Probabilistic Latent Semantic Analysis Model for Coclustering the Mouse Brain Atlas (Abstract)

Shuiwang Ji , Dept. of Comput. Sci., Old Dominion Univ., Norfolk, VA, USA
Wenlu Zhang , Dept. of Comput. Sci., Old Dominion Univ., Norfolk, VA, USA
Rongjian Li , Dept. of Comput. Sci., Old Dominion Univ., Norfolk, VA, USA
pp. 1460-1468

An Exact Algorithm for the Zero Exemplar Breakpoint Distance Problem (Abstract)

Daming Zhu , Sch. of Comput. Sci. & Technol., Shandong Univ., Jinan, China
Lusheng Wang , Dept. of Comput. Sci., City Univ. of Hong Kong, Kowloon, China
pp. 1469-1477

Designing Pooling Systems for Noisy High-Throughput Protein-Protein Interaction Experiments Using Boolean Compressed Sensing (Abstract)

Ramy Mourad , Dept. of Electr. & Comput. Eng., American Univ. of Beirut, Beirut, Lebanon
Zaher Dawy , Dept. of Electr. & Comput. Eng., American Univ. of Beirut, Beirut, Lebanon
Faruck Morcos , Center for Theor. Biol. Phys., Rice Univ., Houston, TX, USA
pp. 1478-1490

EEG/ERP Adaptive Noise Canceller Design with Controlled Search Space (CSS) Approach in Cuckoo and Other Optimization Algorithms (Abstract)

M. K. Ahirwal , Pandit Dwarka Prasad Mishra Indian Inst. of Inf. Technol., Design & Manuf., Jabalpur, India
Anil Kumar , Pandit Dwarka Prasad Mishra Indian Inst. of Inf. Technol., Design & Manuf., Jabalpur, India
G. K. Singh , Indian Inst. of Technol. Roorkee, Roorkee, India
pp. 1491-1504

Multivariate Hypergeometric Similarity Measure (Abstract)

Chanchala D. Kaddi , Dept. of Biomed. Eng., Georgia Inst. of Technol., Atlanta, GA, USA
R. Mitchell Parry , Dept. of Comput. Sci., Appalachian State Univ., Boone, NC, USA
May D. Wang , Dept. of Biomed. Eng., Georgia Inst. of Technol., Atlanta, GA, USA
pp. 1505-1516

Predicting Protein-Ligand Binding Site Using Support Vector Machine with Protein Properties (Abstract)

Ginny Y. Wong , Dept. of Electron. & Inf. Eng., Hong Kong Polytech. Univ., Hung Hom, China
Frank H. F. Leung , Dept. of Electron. & Inf. Eng., Hong Kong Polytech. Univ., Hung Hom, China
S. H. Ling , Centre for Health Technol., Univ. of Technol. Sydney, Sydney, NSW, Australia
pp. 1517-1529

Probabilistic Model Checking Analysis of Palytoxin Effects on Cell Energy Reactions of the Na+/K+-ATPase (Abstract)

Fernando A. F. Braz , Dept. of Comput. Sci., Univ. Fed. de Minas Gerais, Belo Horizonte, Brazil
Jader S. Cruz , Dept. of Comput. Sci., Univ. Fed. de Minas Gerais, Belo Horizonte, Brazil
Alessandra C. Faria-Campos , Dept. of Comput. Sci., Univ. Fed. de Minas Gerais, Belo Horizonte, Brazil
Sergio V. A. Campos , Dept. of Comput. Sci., Univ. Fed. de Minas Gerais, Belo Horizonte, Brazil
pp. 1530-1541

A Combinatorial Perspective of the Protein Inference Problem (Abstract)

Chao Yang , Dept. of Electron. & Comput. Eng., Hong Kong Univ. of Sci. & Technol., Hong Kong, China
Zengyou He , Sch. of Software, Dalian Univ. of Technol., Dalian, China
Weichuan Yu , Dept. of Electron. & Comput. Eng., Hong Kong Univ. of Sci. & Technol., Hong Kong, China
pp. 1542-1547

Protein Structure Optimization with a "Lamarckian"' Ant Colony Algorithm (Abstract)

Mark T. Oakley , Sch. of Chem., Univ. of Birmingham, Birmingham, UK
E. Grace Richardson , Sch. of Chem., Univ. of Birmingham, Birmingham, UK
Harriet Carr , Sch. of Chem., Univ. of Birmingham, Birmingham, UK
Roy L. Johnston , Sch. of Chem., Univ. of Birmingham, Birmingham, UK
pp. 1548-1552

[Back inside cover] (PDF)

pp. c3

[Table of Contents] (PDF)

pp. c4
107 ms
(Ver )