CSDL - IEEE/ACM Transactions on Computational Biology and Bioinformatics - Table of Contents

TABLE OF CONTENTS

Issue No. 03 - May-June (vol. 10)

ISSN: 1545-5963

A Recent Survey on Colon Cancer Detection Techniques (Abstract)

Saima Rathore , Dept. of Comput. & Inf. Sci., Pakistan Inst. of Eng. & Appl. Sci., Islamabad, Pakistan

Mutawarra Hussain , Dept. of Comput. & Inf. Sci., Pakistan Inst. of Eng. & Appl. Sci., Islamabad, Pakistan

Ahmad Ali , Dept. of Comput. & Inf. Sci., Pakistan Inst. of Eng. & Appl. Sci., Islamabad, Pakistan

Asifullah Khan , Dept. of Comput. & Inf. Sci., Pakistan Inst. of Eng. & Appl. Sci., Islamabad, Pakistan

pp. 545-563

A Combination of Feature Extraction Methods with an Ensemble of Different Classifiers for Protein Structural Class Prediction Problem (Abstract)

Abdollah Dehzangi , Griffith University, and National ICT Australia (NICTA), Brisbane

Kuldip Paliwal , Griffith University, Brisbane

Alok Sharma , Griffith University, Brisbane and University of the South Pacific, Fiji

Omid Dehzangi , University of Texas at Dallas, Dallas

Abdul Sattar , Griffith University, and National ICT Australia (NICTA), Brisbane

pp. 564-575

Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution (Abstract)

pp. 576-583

Boolean Networks with Multiexpressions and Parameters (Abstract)

Yi Ming Zou , Dept. of Math. Sci., Univ. of Wisconsin-Milwaukee, Milwaukee, WI, USA

pp. 584-592

Comparison of Feature Selection Methods for Cross-Laboratory Microarray Analysis (Abstract)

Hsi-Che Liu , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei

Pei-Chen Peng , National Taiwan University, Taipei

Tzung-Chien Hsieh , National Taiwan University, Taipei

Ting-Chi Yeh , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei

Chih-Jen Lin , National Taiwan University, Taipei

Chien-Yu Chen , National Taiwan University, Taipei

Jen-Yin Hou , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei

Lee-Yung Shih , Chang Gung Memorial Hospital, Taipei, and Chang Gung University, Taoyuan

Der-Cherng Liang , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei

pp. 593-604

Designing Integrated Computational Biology Pipelines Visually (Abstract)

Hasan M. Jamil , Dept. of Comput. Sci., Univ. of Idaho, Moscow, ID, USA

pp. 605-618

Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes (Abstract)

Francesco Abate , Polytech. of Turin, Turin, Italy

Andrea Acquaviva , Polytech. of Turin, Turin, Italy

Elisa Ficarra , Polytech. of Turin, Turin, Italy

Roberto Piva , Univ. of Turin, Turin, Italy

Enrico Macii , Polytech. of Turin, Turin, Italy

pp. 619-631

Generalized Query-Based Active Learning to Identify Differentially Methylated Regions in DNA (Abstract)

Md Muksitul Haque , Sch. of Electr. Eng. & Comput. Sci., Washington State Univ., Pullman, WA, USA

Lawrence B. Holder , Sch. of Electr. Eng. & Comput. Sci., Washington State Univ., Pullman, WA, USA

Michael K. Skinner , Sch. of Biol. Sci., Washington State Univ., Pullman, WA, USA

Diane J. Cook , Sch. of Electr. Eng. & Comput. Sci., Washington State Univ., Pullman, WA, USA

pp. 632-644

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations (Abstract)

Gordon Gremme , Center for Bioinf., Univ. of Hamburg, Hamburg, Germany

Sascha Steinbiss , Center for Bioinf., Univ. of Hamburg, Hamburg, Germany

Stefan Kurtz , Center for Bioinf., Univ. of Hamburg, Hamburg, Germany

pp. 645-656

Hybrid Fuzzy Cluster Ensemble Framework for Tumor Clustering from Biomolecular Data (Abstract)

Zhiwen Yu , South China University of Technology, Guangzhou and Hong Kong Polytechnic University, Hong Kong

Hantao Chen , South China University of Technology, Guangzhou

Jane You , Hong Kong Polytechnic University, Hong Kong

Guoqiang Han , South China University of Technology, Guangzhou

Le Li , South China University of Technology, Guangzhou

pp. 657-670

Inference of Gene Regulatory Networks with Variable Time Delay from Time-Series Microarray Data (Abstract)

Ola ElBakry , Dept. of Electr. & Comput. Eng., Concordia Univ., Montreal, QC, Canada

M. Omair Ahmad , Dept. of Electr. & Comput. Eng., Concordia Univ., Montreal, QC, Canada

M. N. S. Swamy , Dept. of Electr. & Comput. Eng., Concordia Univ., Montreal, QC, Canada

pp. 671-687

Informative SNPs Selection Based on Two-Locus and Multilocus Linkage Disequilibrium: Criteria of Max-Correlation and Min-Redundancy (Abstract)

Xiong Li , Coll. of Inf. Sci. & Eng., Hunan Univ., Changsha, China

Bo Liao , Coll. of Inf. Sci. & Eng., Hunan Univ., Changsha, China

Lijun Cai , Coll. of Inf. Sci. & Eng., Hunan Univ., Changsha, China

Zhi Cao , Coll. of Inf. Sci. & Eng., Hunan Univ., Changsha, China

Wen Zhu , Coll. of Inf. Sci. & Eng., Hunan Univ., Changsha, China

pp. 688-695

Modeling Associated Protein-DNA Pattern Discovery with Unified Scores (Abstract)

Tak-Ming Chan , Dept. of Comput. Sci. & Eng., Chinese Univ. of Hong Kong, Shatin, China

Leung-Yau Lo , Dept. of Comput. Sci. & Eng., Chinese Univ. of Hong Kong, Shatin, China

Ho-Yin Sze-To , Dept. of Comput. Sci. & Eng., Chinese Univ. of Hong Kong, Shatin, China

Kwong-Sak Leung , Dept. of Comput. Sci. & Eng., Chinese Univ. of Hong Kong, Shatin, China

Xinshu Xiao , Dept. of Integrative Biol. & Physiol., Univ. of California Los Angeles, Los Angeles, CA, USA

Man-Hon Wong , Dept. of Comput. Sci. & Eng., Chinese Univ. of Hong Kong, Shatin, China

pp. 696-707

Multiobjective Identification of Controlling Areas in Neuronal Networks (Abstract)

Yang Tang , Inst. of Phys., Humboldt Univ. of Berlin, Berlin, Germany

Huijun Gao , Res. Inst. of Intell. Control & Syst., Harbin Inst. of Technol., Harbin, China

Jurgen Kurths , Dept. of Transdisciplinary Concepts & Methods, Potsdam Inst. for Climate Impact Res., Potsdam, Germany

pp. 708-720

On the Neighborhoods of Trees (Abstract)

Peter J. Humphries , Dept. of Math. & Phys., North Carolina Central Univ., Durham, NC, USA

Taoyang Wu , Sch. of Comput. Sci., Univ. of East Anglia, Norwich, UK

pp. 721-728

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks (Abstract)

Yijia Zhang , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

Hongfei Lin , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

Zhihao Yang , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

Jian Wang , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

Yanpeng Li , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

Bo Xu , Coll. of Comput. Sci. & Technol., Dalian Univ. of Technol., Dalian, China

pp. 729-741

Reformulated Kemeny Optimal Aggregation with Application in Consensus Ranking of microRNA Targets (Abstract)

Debarka Sengupta , Indian Stat. Inst., Kolkata, India

Aroonalok Pyne , Jadavpur Univ., Kolkata, India

Ujjwal Maulik , Jadavpur Univ., Kolkata, India

Sanghamitra Bandyopadhyay , Indian Stat. Inst., Kolkata, India

pp. 742-751

Sequence-Based Prediction of microRNA-Binding Residues in Proteins Using Cost-Sensitive Laplacian Support Vector Machines (Abstract)

Jian-Sheng Wu , Nat. Key Lab. for Novel Software Technol., Nanjing Univ., Nanjing, China

Zhi-Hua Zhou , Nat. Key Lab. for Novel Software Technol., Nanjing Univ., Nanjing, China

pp. 752-759

Studying the Role of Lipid Rafts on Protein Receptor Bindings with Cellular Automata (Abstract)

Fiete Haack , Modeling & Simulation Group, Univ. of Rostock, Rostock, Germany

Kevin Burrage , Dept. of Comput. Sci., Oxford Univ., Oxford, UK

Ronald Redmer , Inst. fur Phys., Univ. Rostock, Rostock, Germany

Adelinde M. Uhrmacher , Modeling & Simulation Group, Univ. of Rostock, Rostock, Germany

pp. 760-770

Systematic Analysis of the Mechanisms of Virus-Triggered Type I IFN Signaling Pathways through Mathematical Modeling (Abstract)

Wei Zhang , Sch. of Math. & Stat., Wuhan Univ., Wuhan, China

Xiufen Zou , Sch. of Math. & Stat., Wuhan Univ., Wuhan, China

pp. 771-779

Utilizing Both Topological and Attribute Information for Protein Complex Identification in PPI Networks (Abstract)

Allen L. Hu , The Hong Kong Polytechnic University, Hong Kong

Keith C.C. Chan , The Hong Kong Polytechnic University, Hong Kong

pp. 780-792

A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches (Abstract)

S. P. Garcia , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

J. M. O. S. Rodrigues , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

S. Santos , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

D. Pratas , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

V. Afreixo , Dept. of Math., Univ. of Aveiro, Aveiro, Portugal

C. A. C. Bastos , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

P. J. S. G. Ferreira , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

A. J. Pinho , Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal

pp. 793-798

A New Approach to Implement Absorbing Boundary Condition in Biomolecular Electrostatics (Abstract)

Md Osman Goni , Dept. of Electron. & Commun. Eng., Khulna Univ. of Eng. & Technol., Khulna, Bangladesh

pp. 799-804

Computer-Aided Biophysical Modeling: A Quantitative Approach to Complex Biological Systems (Abstract)

Edoardo Milotti , Dipt. di Fis., Univ. di Trieste, Trieste, Italy

Vladislav Vyshemirsky , Dept. of Math. & Stat., Univ. of Strathclyde, Glasgow, UK

Michela Sega , Dipt. di Biotecnologie, Univ. of Verona, Verona, Italy

Sabrina Stella , Dipt. di Fis., Univ. di Trieste, Trieste, Italy

Federico Dogo , Dipt. di Fis., Univ. di Trieste, Trieste, Italy

Roberto Chignola , Dipt. di Biotecnologie, Univ. of Verona, Verona, Italy

pp. 805-810

Quantitative Prediction of Peptide Binding to HLA-DP1 Protein (Abstract)

Stefan Ivanov , Sch. of Pharmacy, Med. Univ. of Sofia, Sofia, Bulgaria

Ivan Dimitrov , Sch. of Pharmacy, Med. Univ. of Sofia, Sofia, Bulgaria

Irini Doytchinova , Sch. of Pharmacy, Med. Univ. of Sofia, Sofia, Bulgaria

pp. 811-815

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