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TABLE OF CONTENTS
Issue No. 03 - May-June (vol. 10)
ISSN: 1545-5963

A Recent Survey on Colon Cancer Detection Techniques (Abstract)

Saima Rathore , DCIS, Pakistan Institute of Engineering and Applied Sciences, Nilore, Islamabad and University of Azad Jammu and Kashmir, Muzaffarabad, Azad Kashmir
Mutawarra Hussain , DCIS, Pakistan Institute of Engineering and Applied Sciences, Nilore, Islamabad
Ahmad Ali , DCIS, Pakistan Institute of Engineering and Applied Sciences, Nilore, Islamabad
Asifullah Khan , DCIS, Pakistan Institute of Engineering and Applied Sciences, Nilore, Islamabad
pp. 545-563

A Combination of Feature Extraction Methods with an Ensemble of Different Classifiers for Protein Structural Class Prediction Problem (Abstract)

Abdollah Dehzangi , Griffith University, and National ICT Australia (NICTA), Brisbane
Kuldip Paliwal , Griffith University, Brisbane
Alok Sharma , Griffith University, Brisbane and University of the South Pacific, Fiji
Omid Dehzangi , University of Texas at Dallas, Dallas
Abdul Sattar , Griffith University, and National ICT Australia (NICTA), Brisbane
pp. 564-575

Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution (Abstract)

Magnus Bordewich , Durham University, Durham
Radu Mihaescu , Knight Capital Group, Santa Clara
pp. 576-583

Boolean Networks with Multiexpressions and Parameters (Abstract)

Yi Ming Zou , University of Wisconsin-Milwaukee, Milwaukee
pp. 584-592

Comparison of Feature Selection Methods for Cross-Laboratory Microarray Analysis (Abstract)

Hsi-Che Liu , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Pei-Chen Peng , National Taiwan University, Taipei
Tzung-Chien Hsieh , National Taiwan University, Taipei
Ting-Chi Yeh , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Chih-Jen Lin , National Taiwan University, Taipei
Chien-Yu Chen , National Taiwan University, Taipei
Jen-Yin Hou , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Lee-Yung Shih , Chang Gung Memorial Hospital, Taipei, and Chang Gung University, Taoyuan
Der-Cherng Liang , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
pp. 593-604

Designing Integrated Computational Biology Pipelines Visually (Abstract)

Hasan M. Jamil , University of Idaho, Moscow
pp. 605-618

Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes (Abstract)

Francesco Abate , Polytechnic of Turin, Turin
Andrea Acquaviva , Polytechnic of Turin, Turin
Elisa Ficarra , Polytechnic of Turin, Turin
Roberto Piva , University of Turin, Turin
Enrico Macii , Polytechnic of Turin, Turin
pp. 619-631

Generalized Query-Based Active Learning to Identify Differentially Methylated Regions in DNA (Abstract)

Md. Muksitul Haque , Washington State University, Pullman
Lawrence B. Holder , Washington State University, Pullman
Michael K. Skinner , Washington State University, Pullman
Diane J. Cook , Washington State University, Pullman
pp. 632-644

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations (Abstract)

Gordon Gremme , University of Hamburg, Hamburg
Sascha Steinbiss , University of Hamburg, Hamburg
Stefan Kurtz , University of Hamburg, Hamburg
pp. 645-656

Hybrid Fuzzy Cluster Ensemble Framework for Tumor Clustering from Biomolecular Data (Abstract)

Zhiwen Yu , South China University of Technology, Guangzhou and Hong Kong Polytechnic University, Hong Kong
Hantao Chen , South China University of Technology, Guangzhou
Jane You , Hong Kong Polytechnic University, Hong Kong
Guoqiang Han , South China University of Technology, Guangzhou
Le Li , South China University of Technology, Guangzhou
pp. 657-670

Inference of Gene Regulatory Networks with Variable Time Delay from Time-Series Microarray Data (Abstract)

Ola ElBakry , Concordia University, Montreal
M. Omair Ahmad , Concordia University, Montreal
M. N. S. Swamy , Concordia University, Montreal
pp. 671-687

Informative SNPs Selection Based on Two-Locus and Multilocus Linkage Disequilibrium: Criteria of Max-Correlation and Min-Redundancy (Abstract)

Xiong Li , Hunan University, Changsha
Bo Liao , Hunan University, Changsha
Lijun Cai , Hunan University, Changsha
Zhi Cao , Hunan University, Changsha
Wen Zhu , Hunan University, Changsha
pp. 688-695

Modeling Associated Protein-DNA Pattern Discovery with Unified Scores (Abstract)

Tak-Ming Chan , University of California Los Angeles, Los Angeles
Leung-Yau Lo , The Chinese University of Hong Kong, Shatin
Ho-Yin Sze-To , The Chinese University of Hong Kong, Shatin
Kwong-Sak Leung , The Chinese University of Hong Kong, Shatin
Xinshu Xiao , University of California Los Angeles, Los Angeles
Man-Hon Wong , The Chinese University of Hong Kong, Shatin
pp. 696-707

Multiobjective Identification of Controlling Areas in Neuronal Networks (Abstract)

Yang Tang , Humboldt University of Berlin, Berlin and Potsdam Institute for Climate Impact Research, Potsdam
Huijun Gao , Harbin Institute of Technology, Harbin
Jurgen Kurths , Potsdam Institute for Climate Impact Research, Potsdam, Humboldt University of Berlin, Berlin, and University of Aberdeen, Aberdeen
pp. 708-720

On the Neighborhoods of Trees (Abstract)

Peter J. Humphries , North Carolina Central University, Durham
Taoyang Wu , University of East Anglia, Norwich
pp. 721-728

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks (Abstract)

Yijia Zhang , Dalian University of Technology, Dalian
Hongfei Lin , Dalian University of Technology, Dalian
Zhihao Yang , Dalian University of Technology, Dalian
Jian Wang , Dalian University of Technology, Dalian
Yanpeng Li , Dalian University of Technology, Dalian
Bo Xu , Dalian University of Technology, Dalian
pp. 729-741

Reformulated Kemeny Optimal Aggregation with Application in Consensus Ranking of microRNA Targets (Abstract)

Debarka Sengupta , Indian Statistical Institute, Kolkata
Aroonalok Pyne , Jadavpur University, Kolkata
Ujjwal Maulik , Jadavpur University, Kolkata
Sanghamitra Bandyopadhyay , Indian Statistical Institute, Kolkata
pp. 742-751

Sequence-Based Prediction of microRNA-Binding Residues in Proteins Using Cost-Sensitive Laplacian Support Vector Machines (Abstract)

Jian-Sheng Wu , Nanjing University and Nanjing University of Posts and Telecommunications, Nanjing
Zhi-Hua Zhou , Nanjing University, Nanjing
pp. 752-759

Studying the Role of Lipid Rafts on Protein Receptor Bindings with Cellular Automata (Abstract)

Fiete Haack , University of Rostock, Rostock
Kevin Burrage , Oxford University, Oxford and QUT, Brisbane
Ronald Redmer , University of Rostock, Rostock
Adelinde M. Uhrmacher , University of Rostock, Rostock
pp. 760-770

Utilizing Both Topological and Attribute Information for Protein Complex Identification in PPI Networks (Abstract)

Allen L. Hu , The Hong Kong Polytechnic University, Hong Kong
Keith C. C. Chan , The Hong Kong Polytechnic University, Hong Kong
pp. 780-792

A Genomic Distance for Assembly Comparison Based on Compressed Maximal Exact Matches (Abstract)

Sara P. Garcia , University of Aveiro, Aveiro
Joao M. O. S. Rodrigues , University of Aveiro, Aveiro
Sergio Santos , University of Aveiro, Aveiro
Diogo Pratas , University of Aveiro, Aveiro
Vera Afreixo , University of Aveiro, Aveiro
Carlos Bastos , University of Aveiro, Aveiro
Paulo J. S. G. Ferreira , University of Aveiro, Aveiro
Armando J. Pinho , University of Aveiro, Aveiro
pp. 793-798

A New Approach to Implement Absorbing Boundary Condition in Biomolecular Electrostatics (Abstract)

Osman Goni , Khulna University of Engineering and Technology, Khulna
pp. 799-804

Computer-Aided Biophysical Modeling: A Quantitative Approach to Complex Biological Systems (Abstract)

Edoardo Milotti , University of Trieste and I.N.F.N.-Sezione di Trieste, Trieste
Vladislav Vyshemirsky , University of Strathclyde, Glasgow
Michela Sega , University of Verona, Verona
Sabrina Stella , University of Trieste, Trieste
Federico Dogo , University of Trieste, Trieste
Roberto Chignola , University of Verona, Verona
pp. 805-810

Quantitative Prediction of Peptide Binding to HLA-DP1 Protein (Abstract)

Stefan Ivanov , Medical University of Sofia, Sofia
Ivan Dimitrov , Medical University of Sofia, Sofia
Irina Doytchinova , Medical University of Sofia, Sofia
pp. 811-815
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