High Performance Computational Systems Biology (HTML)

Clustering 100,000 Protein Structure Decoys in Minutes (Abstract)

On the Application of Active Learning and Gaussian Processes in Postcryopreservation Cell Membrane Integrity Experiments (Abstract)

Exploiting Intrastructure Information for Secondary Structure Prediction with Multifaceted Pipelines (Abstract)

A Biologically Inspired Validity Measure for Comparison of Clustering Methods over Metabolic Data Sets (Abstract)

Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model (Abstract)

Markov Invariants for Phylogenetic Rate Matrices Derived from Embedded Submodels (Abstract)

The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations (Abstract)

The Relevance of Topology in Parallel Simulation of Biological Networks (Abstract)

Weighted Markov Chain Based Aggregation of Biomolecule Orderings (Abstract)

Mutual Information Optimization for Mass Spectra Data Alignment (Abstract)

Designing Filters for Fast-Known NcRNA Identification (Abstract)

IEEE/ACM Transactions on Computational Biology and Bioinformatics Seeks New Editor in Chief for 2013-2014 Terms (PDF)

A Coclustering Approach for Mining Large Protein-Protein Interaction Networks (Abstract)

Constructing Complex 3D Biological Environments from Medical Imaging Using High Performance Computing (Abstract)

Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification (Abstract)

A Framework for Incorporating Functional Interrelationships into Protein Function Prediction Algorithms (Abstract)

Fast Parallel Markov Clustering in Bioinformatics Using Massively Parallel Computing on GPU with CUDA and ELLPACK-R Sparse Format (Abstract)

Faster Mass Spectrometry-Based Protein Inference: Junction Trees Are More Efficient than Sampling and Marginalization by Enumeration (Abstract)

On Parameter Synthesis by Parallel Model Checking (Abstract)

Quantifying Dynamic Stability of Genetic Memory Circuits (Abstract)

Gene Classification Using Parameter-Free Semi-Supervised Manifold Learning (Abstract)

Reverse Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles Using High-Performance Computing (Abstract)

A Comparative Study on Filtering Protein Secondary Structure Prediction (Abstract)

Mutagenic Primer Design for Mismatch PCR-RFLP SNP Genotyping Using a Genetic Algorithm (Abstract)