The Community for Technology Leaders
Green Image
TABLE OF CONTENTS
Issue No. 04 - July/August (vol. 8)
ISSN: 1545-5963
Special Section on Bioinformatics Research and Applications

A Spectral Approach to Protein Structure Alignment (Abstract)

Allen Holder , Rose-Hulman Institute of Technology, Terre Haute
Yosi Shibberu , Rose-Hulman Institute of Technology, Terre Haute
pp. 867-875

Asymmetric Comparison and Querying of Biological Networks (Abstract)

Luigi Palopoli , University of Calabria, Rende (Cosenza)
Nicola Ferraro , University of Calabria, Rende (Cosenza)
Simona Panni , University of Calabria, Rende (Cosenza)
Simona E. Rombo , University of Calabria, Rende (Cosenza)
pp. 876-889

The Plexus Model for the Inference of Ancestral Multidomain Proteins (Abstract)

John Wiedenhoeft , Max Planck Institute for Molecular Genetics and Free University of Berlin, Berlin
Roland Krause , Max Planck Institute for Molecular Genetics and Free University of Berlin, Berlin
Oliver Eulenstein , Iowa State University, Ames
pp. 890-901

Uncovering Hidden Phylogenetic Consensus in Large Data Sets (Abstract)

Nicholas D. Pattengale , Sandia National Laboratories, Albuquerque
Andre J. Aberer , TUM, Munich
Bernard M.E. Moret , Ecole Polytechnique Federale de Lausanne
Alexandros Stamatakis , TUM, Munich
Krister M. Swenson , University of Ottawa/Université du Québec à Montréal, Montreal
pp. 902-911

A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure (Abstract)

Ming-Chi Tsai , Joint CMU-Pitt PhD Program in Computational Biology, Pittsburgh
Russell Schwartz , Carnegie Mellon University, Pittsburgh
Guy Blelloch , Carnegie Mellon University, Pittsburgh
R. Ravi , Carnegie-Mellon University, Pittsburgh
pp. 918-928
Regular Papers

A Biologically Inspired Measure for Coexpression Analysis (Abstract)

Sanghamitra Bandyopadhyay , Indian Statistical Institute, Kolkata
Malay Bhattacharyya , Indian Statistical Institute, Kolkata
pp. 929-942

A Survey on Methods for Modeling and Analyzing Integrated Biological Networks (Abstract)

Susana Vinga , Investigação e Desenvolvimento, INESC-ID, Lisboa
Nuno Tenazinha , Investigação e Desenvolvimento, INESC-ID, Lisboa
pp. 943-958

An Improved Heuristic Algorithm for Finding Motif Signals in DNA Sequences (Abstract)

Wun-Shiun Lee , National Cheng Kung University, Tainan
Sun-Yuan Hsieh , National Cheng Kung University, Tainan
Chao-Wen Huang , National Cheng Kung University, Tainan
pp. 959-975

Determination of Glycan Structure from Tandem Mass Spectra (Abstract)

Sebastian Böcker , Friedrich-Schiller-Universität Jena, Jena
Florian Rasche , Friedrich-Schiller-Universität Jena, Jena
Birte Kehr , Institute for Computer Science, Takustraβe, Berlin
pp. 976-986

EvoMD: An Algorithm for Evolutionary Molecular Design (Abstract)

Weimin Luo , The Hong Kong Polytechnic University, Hong Kong
Samuel S.Y. Wong , The Hong Kong Polytechnic University, Hong Kong
Keith C.C. Chan , The Hong Kong Polytechnic University, Hong Kong
pp. 987-1003

Image-Based Surface Matching Algorithm Oriented to Structural Biology (Abstract)

Andrea Clematis , Italian National Research Council, Genoa
Luciano Milanesi , Italian National Research Council, Milan
Ivan Merelli , Italian National Research Council, Milan
Paolo Cozzi , Italian National Research Council, Milan
Daniele D'Agostino , Italian National Research Council, Genoa
pp. 1004-1016

Is There an Optimal Substitution Matrix for Contact Prediction with Correlated Mutations? (Abstract)

Pietro Di Lena , University of Bologna, Bologna
Luciano Margara , University of Bologna, Bologna
Rita Casadio , University of Bologna, Bologna
Piero Fariselli , University of Bologna, Bologna
Marco Vassura , University of Bologna, Bologna
pp. 1017-1028

Metrics on Multilabeled Trees: Interrelationships and Diameter Bounds (Abstract)

Radosław Suchecki , University of East Anglia, Norwich
Andreas Spillner , University of Greifswald, Greifswald
Katharina T. Huber , University of East Anglia , Norwich
Vincent Moulton , University of East Anglia
pp. 1029-1040

Multiclass Kernel-Imbedded Gaussian Processes for Microarray Data Analysis (Abstract)

Leo Wang-Kit Cheung , Loyola University Medical Center, Maywood
Xin Zhao , Sanjole Inc., Honolulu
pp. 1041-1053

Peak Tree: A New Tool for Multiscale Hierarchical Representation and Peak Detection of Mass Spectrometry Data (Abstract)

Xiaobo Zhou , The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston
Peng Zhang , University of Science and Technology of China, Hefei
Houqiang Li , University of Science and Technology of China, Hefei
Honghui Wang , National Institutes of Health, Bethesda
Stephen T.C. Wong , The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston
pp. 1054-1066

Predicting MHC-II Binding Affinity Using Multiple Instance Regression (Abstract)

Vasant Honavar , Iowa State University, Ames
Drena Dobbs , Iowa State University, Ames
Yasser EL-Manzalawy , Al-Azhar University, Cairo
pp. 1067-1079

Robust Feature Selection for Microarray Data Based on Multicriterion Fusion (Abstract)

Feng Yang , Nanyang Technological University, Singapore
K.Z. Mao , Nanyang Technological University, Singapore
pp. 1080-1092

Searching for Coexpressed Genes in Three-Color cDNA Microarray Data Using a Probabilistic Model-Based Hough Transform (Abstract)

Hong Yan , City University of Hong Kong, Hong Kong
Peter Tiňo , The University of Birmingham, Birmingham
Hongya Zhao , Anderson Cancer Center, The University of Texas, Houston
pp. 1093-1107

The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation (Abstract)

P. Kerr Wall , BASF Plant Science, Research Triangle Park
Kevin Beckmann , The Huck Institutes of Life Sciences and Pennsylvania State University
Claude W. dePamphilis , The Huck Institutes of Life Sciences and Pennsylvania State University
Tandy Warnow , University of Texas at Austin, Austin
Jim Leebens-Mack , University of Georgia, Athens
Li-San Wang , University of Pennsylvania, Philadelphia
pp. 1108-1119

Toward a Robust Search Method for the Protein-Drug Docking Problem (Abstract)

Zsolt Zsoldos , Simulated Biomolecular Systems, Toronto
Bashir S. Sadjad , University of Waterloo, Waterloo
pp. 1120-1133
Short Papers

Accurate Reconstruction for DNA Sequencing by Hybridization Based on a Constructive Heuristic (Abstract)

Yang Chen , Waseda University, Fukuoka
Jinglu Hu , Waseda University, Fukuoka
pp. 1134-1140

Computing a Smallest Multilabeled Phylogenetic Tree from Rooted Triplets (Abstract)

Jesper Jansson , Ochanomizu University, Tokyo
Wing-Kin Sung , National University of Singapore, Singapore
Sylvain Guillemot , Institut Gaspard Monge, Marne-la-Vallee
pp. 1141-1147

Two-Step Cross-Entropy Feature Selection for Microarrays—Power Through Complementarity (Abstract)

To-Ha Loi , St. Vincent's Hospital and St. Vincent's Centre for Applied Medical Research, Sydney
David W. Bulger , Macquarie University, Sydney
Tim Peters , Macquarie University, Sydney
Jean Yee Hwa Yang , University of Sydney, Sydney
David Ma , St. Vincent's Hospital and St. Vincent's Centre for Applied Medical Research, Sydney
pp. 1148-1151
91 ms
(Ver )