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TABLE OF CONTENTS
Issue No. 04 - October-December (vol. 7)
ISSN: 1545-5963
SPECIAL SECTION ON BIOINFORMATICS RESEARCH AND APPLICATIONS

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications (HTML)

Giri Narasimhan , Florida International University, University Park
Yanqing Zhang , Georgia State University, Atlanta
Yi Pan , Georgia State University, Atlanta
Ion Mandou , University of Connecticut, Storrs
pp. 577-578

Rearrangement Phylogeny of Genomes in Contig Form (Abstract)

David Sankoff , University of Ottawa, Ottawa
Adriana Muñoz , University of Ottawa, Ottawa
pp. 579-587

Untangling Tanglegrams: Comparing Trees by Their Drawings (Abstract)

Dan Gusfield , University of California Davis, Davis
Jim Apple , University of California Davis, Davis
Balaji Venkatachalam , University of California Davis, Davis
Katherine St. John , Lehman College and City University of New York, New York
pp. 588-597

Pure Parsimony Xor Haplotyping (Abstract)

Gianluca Della Vedova , Università Degli Studi di Milano-Bicocca, Milano
Yuri Pirola , Università Degli Studi di Milano-Bicocca, Milano
Riccardo Dondi , Università degli Studi di Bergamo, Bergamo
Romeo Rizzi , Università degli Studi di Udine, Udine
Paola Bonizzoni , Università Degli Studi di Milano-Bicocca, Milano
pp. 598-610

Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots (Abstract)

Sanguthevar Rajasekaran , University of Connecticut, Storrs
Reda A. Ammar , University of Connecticut, Storrs
Sahar Al Seesi , University of Connecticut, Storrs
pp. 619-627

Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set (Abstract)

Guillaume Blin , Université Paris-Est, France
Stéphane Vialette , Université Paris-Est, France
Florian Sikora , Université Paris-Est, France
pp. 628-635
REGULAR PAPERS

A Survey of Spatial Defects in Homo Sapiens Affymetrix GeneChips (Abstract)

Andrew P. Harrison , University of Essex, Colchester
Renata da Silva Camargo , University of Essex, Colchester
G.J.G. Upton , University of Essex, Colchester
W.B. Langdon , University of Essex, Colchester
pp. 647-653

A Cluster Refinement Algorithm for Motif Discovery (Abstract)

Gang Li , Chinese University of Hong Kong, Hong Kong
Tak-Ming Chan , Chinese University of Hong Kong, Hong Kong
Kwong-Sak Leung , Chinese University of Hong Kong, Hong Kong
Kin-Hong Lee , Chinese University of Hong Kong, Hong Kong
pp. 654-668

Finding the Nearest Neighbors in Biological Databases Using Less Distance Computations (Abstract)

Jörg Sander , University of Alberta, Edmonton
Jianjun Zhou , University of Alberta, Edmonton
Guohui Lin , University of Alberta, Edmonton
Lusheng Wang , City University of Hong Kong, Hong Kong
Zhipeng Cai , University of Alberta, Edmonton
pp. 669-680

Human-Readable Rule Generator for Integrating Amino Acid Sequence Information and Stability of Mutant Proteins (Abstract)

Liang-Tsung Huang , Mingdao University, Changhua
Lien-Fu Lai , National Changhua University of Education, Changhua
M. Michael Gromiha , National Institute of Advanced Industrial Science and Technology (AIST), Tokyo
pp. 681-687

Quantifying the Degree of Self-Nestedness of Trees: Application to the Structural Analysis of Plants (Abstract)

Pascal Ferraro , University of Bordeaux, Bordeaux
Christophe Godin , INRIA, Sophia-Antipolis Méditerranée, Virtual Plants, UMR, DAP, Montpellier
pp. 688-703

Quartets MaxCut: A Divide and Conquer Quartets Algorithm (Abstract)

Sagi Snir , UC Berkeley, Berkeley
Satish Rao , UC Berkeley, Berkeley
pp. 704-718

RDCurve: A Nonparametric Method to Evaluate the Stability of Ranking Procedures (Abstract)

Xin Lu , University of California, San Diego, CA
Anthony Gamst , University of California, San Diego, CA
Ronghui Xu , University of California, San Diego, CA
pp. 719-726

Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes (Abstract)

Liwen You , University of Lund, Lund
Mikael Bodén , University of Queensland, St Lucia
Marcus Gallagher , University of Queensland, St Lucia
Vladimir Brusic , Dana-Farber Cancer Institute, Boston
pp. 741-751

VARUN: Discovering Extensible Motifs under Saturation Constraints (Abstract)

Laxmi Parida , IBM T.J. Watson Research Center, Yorktown Heights
Alberto Apostolico , Georgia Institute of Technology, Atlanta and University of Padova, Padova,
Matteo Comin , University of Padova, Padova
pp. 752-762
SHORT PAPERS

The Metropolized Partial Importance Sampling MCMC Mixes Slowly on Minimum Reversal Rearrangement Paths (Abstract)

Krister Swenson , EPFL, Lausanne
Bence Mélykúti , University of Oxford, Oxford
István Miklós , Renyi Institute of Mathematical Sciences , Budapest
pp. 763-767
ANNUAL INDEX

2010 TCBB Annual Index (PDF)

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