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Issue No. 02 - April-June (vol. 7)
ISSN: 1545-5963

EIC Editorial (HTML)

pp. 193-194
Special Section on BIOKDD

GPD: A Graph Pattern Diffusion Kernel for Accurate Graph Classification with Applications in Cheminformatics (Abstract)

Aaron Smalter , University of Kansas, Lawrence
Jun (Luke) Huan , University of Kansas, Lawrence
Yi Jia , University of Kansas, Lawrence
Gerald Lushington , University of Kansas, Lawrence
pp. 197-207

Molecular Function Prediction Using Neighborhood Features (Abstract)

Petko Bogdanov , University of California at Santa Barbara, Santa Barbara
Ambuj K. Singh , University of California at Santa Barbara, Santa Barbara
pp. 208-217
Regular Papers

A Metric on the Space of Reduced Phylogenetic Networks (Abstract)

Luay Nakhleh , Rice University, Houston
pp. 218-222

Automated Hierarchical Density Shaving: A Robust Automated Clustering and Visualization Framework for Large Biological Data Sets (Abstract)

Gunjan Gupta , University of Texas at Austin
Alexander Liu , University of Texas at Austin
Joydeep Ghosh , University of Texas at Austin
pp. 223-237

Automated Isolation of Translational Efficiency Bias That Resists the Confounding Effect of GC(AT)-Content (Abstract)

Douglas W. Raiford , University of Montana, Missoula
Dan E. Krane , Wright State University, Dayton
Travis E. Doom , Wright State University, Dayton
Michael L. Raymer , Wright State University, Dayton
pp. 238-250

Identification of Full and Partial Class Relevant Genes (Abstract)

Zexuan Zhu , Shenzhen University, Shenzhen
Yew-Soon Ong , Nanyang Technological University, Singapore
Jacek M. Zurada , University of Louisville, Louisville
pp. 263-277

Model Composition for Macromolecular Regulatory Networks (Abstract)

Ranjit Randhawa , Virginia Tech, Blacksburg
Clifford A. Shaffer , Virginia Tech, Blacksburg
John J. Tyson , Virginia Tech, Blacksburg
pp. 278-287

Reassortment Networks for Investigating the Evolution of Segmented Viruses (Abstract)

Shahid H. Bokhari , Ohio State University, Columbus
Daniel A. Janies , Ohio State University, Columbus
pp. 288-298

Signal Quality Measurements for cDNA Microarray Data (Abstract)

Tracy L. Bergemann , University of Minnesota, Minneapolis
Lue Ping Zhao , Fred Hutchinson Cancer Research Center, Seattle
pp. 299-308

Fixed-Parameter Tractability of the Maximum Agreement Supertree Problem (Abstract)

Sylvain Guillemot , LIRMM, CNRS, University of Montpellier, Montpellier
Vincent Berry , LIRMM, CNRS, University of Montpellier, Montpellier
pp. 342-353

Modeling Protein Interacting Groups by Quasi-Bicliques: Complexity, Algorithm, and Application (Abstract)

Xiaowen Liu , City University of Hong Kong, Hong Kong
Jinyan Li , Nanyang Technological University, Singapore
Lusheng Wang , City University of Hong Kong, Hong Kong
pp. 354-364

Sorting Genomes by Reciprocal Translocations, Insertions, and Deletions (Abstract)

Xingqin Qi , Shandong University at Weihai, Weihai
Guojun Li , University of Georgia, Athens
Shuguang Li , Shandong Institute of Business and Technology, Yantai
Ying Xu , University of Georgia, Athens
pp. 365-374
Short Papers

Linear Separability of Gene Expression Data Sets (Abstract)

Giora Unger , Tel-Aviv University, Tel-Aviv
Benny Chor , Tel-Aviv University, Tel-Aviv
pp. 375-381
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