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Issue No. 01 - January-March (2010 vol. 7)
ISSN: 1545-5963
pp: 166-171
Elchanan Mossel , UC Berkeley, Berkeley
Sebastien Roch , Microsoft Research, Redmond
We introduce a simple computationally efficient algorithm for reconstructing phylogenies from multiple gene trees in the presence of incomplete lineage sorting, that is, when the topology of the gene trees may differ from that of the species tree. We show that our technique is statistically consistent under standard stochastic assumptions, that is, it returns the correct tree given sufficiently many unlinked loci. We also show that it can tolerate moderate estimation errors.
Incomplete lineage sorting, coalescent process, topological concordance, statistical consistency.

E. Mossel and S. Roch, "Incomplete Lineage Sorting: Consistent Phylogeny Estimation from Multiple Loci," in IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 7, no. , pp. 166-171, 2008.
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