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TABLE OF CONTENTS
Issue No. 01 - January-March (vol. 6)
ISSN: 1545-5963
EDITORIAL
SPECIAL SECTION ON PHYLOGENETICS

Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy (Abstract)

Serita Nelesen , The University of Texas at Austin, Austin
Kevin Liu , The University of Texas at Austin, Austin
Tandy Warnow , The University of Texas at Austin, Austin
Sindhu Raghavan , The University of Texas at Austin, Austin
C. Randal Linder , The University of Texas at Austin, Austin
pp. 7-21

Budgeted Phylogenetic Diversity on Circular Split Systems (Abstract)

Bui Quang Minh , CIBIV, Vienna
Fabio Pardi , EBI, Hinxton
Steffen Klaere , Center for Integrative Bioinformatics Vienna , Vienna
Arndt von Haeseler , CIBIV, Vienna
pp. 22-29

Hybridization in Nonbinary Trees (Abstract)

Charles Semple , University of Canterbury, Christchurch
Simone Linz , Heinrich-Heine University, Duesseldorf
pp. 30-45

Metrics for Phylogenetic Networks I: Generalizations of the Robinson-Foulds Metric (Abstract)

Mercè Llabrés , University of the Balearic Islands, Palma de Mallorca
Francesc Rosselló , University of the Balearic Islands, Palma de Mallorca
Gabriel Valiente , Technical University of Catalonia, Barcelona
Gabriel Cardona , University of the Balearic Islands, Palma de Mallorca
pp. 46-61

The Identifiability of Covarion Models in Phylogenetics (Abstract)

Elizabeth S. Allman , University of Alaska Fairbanks, Fairbanks
John A. Rhodes , University of Alaska Fairbanks, Fairbanks
pp. 76-88
REGULAR PAPERS

Maximum Parsimony for Tree Mixtures (Abstract)

Vincent Moulton , University of East Anglia
Stefan Grünewald , CAS-MPG Partner Institute for Computational Biology Max Planck Institute for Mathematics in the Sciences, Shanghai Leipzig
pp. 97-102

Drawing Rooted Phylogenetic Networks (Abstract)

Daniel H. Huson , Tuebinge University, Tuebingen
pp. 103-109

Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference (Abstract)

Magnus Bordewich , University of Durham, Durham
Vincent Moulton , University of East Anglia, Norwich
Katharina T. Huber , University of East Anglia , Norwich
Olivier Gascuel , CNRS-Université Montpellier II, Montpellier
pp. 110-117

Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony (Abstract)

Taoyang Wu , Queen Mary, University of London, London
Mike Steel , University of Canterbury, Christchurch
Vincent Moulton , University of East Anglia, Norwich
pp. 118-125

Shrinkage Effect in Ancestral Maximum Likelihood (Abstract)

Elchanan Mossel , UC Berkeley, Berkeley
Sebastien Roch , Microsoft Research, Redmond
Mike Steel , University of Canterbury, Christchurch
pp. 126-133

Structural Properties of Gene Regulatory Networks: Definitions and Connections (Abstract)

Raghunathan Rengaswamy , Clarkson University, Potsdam
Sridharakumar Narasimhan , ITT Madras, Chennai
Rajanikanth Vadigepalli , Thomas Jefferson University, Philadelphia
pp. 158-170
2008 REVIEWERS LIST

2008 Reviewers List (PDF)

pp. 171-173
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