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Issue No. 04 - October-December (vol. 5)
ISSN: 1545-5963

Computational Approaches for Automatic Structural Analysis of Large Biomolecular Complexes (Abstract)

Zeyun Yu , Department of Computer Science, University of Wisconsin, Milwaukee, WI 53211
Chandrajit Bajaj , Computational Visualization Center, Department of Computer Sciences and the Institute of Computational Engineering and Sciences, University of Texas at Austin, Austin, Texas 78712
pp. 568-582

EIC Editorial (HTML)

pp. 481
SPECIAL SECTION on Algorithms in Bioinformatics

Improving Strand Pairing Prediction through Exploring Folding Cooperativity (Abstract)

Jieun Jeong , Penn State University, University Park
Piotr Berman , Penn State University, University Park
Teresa M. Przytycka , NIH, Bethesda
pp. 484-491

Seeded Tree Alignment (Abstract)

Antoni Lozano , Technical University of Catalonia, Barcelona
Ron Y. Pinter , Technion - Israel Institute of Technology, Haifa
Oleg Rokhlenko , Technion - Israel Institute of Technology, Haifa
Gabriel Valiente , Technical University of Catalonia, Barcelona
Michal Ziv-Ukelson , Ben Gurion University of the Negev, Beer-Sheva
pp. 503-513

An Ω(n^2/ log n) Speed-Up of TBR Heuristics for the Gene-Duplication Problem (Abstract)

Mukul S. Bansal , Iowa State University, Ames
Oliver Eulenstein , Iowa State University, Ames
pp. 514-524

Defining and Computing Optimum RMSD for Gapped and Weighted Multiple-Structure Alignment (Abstract)

Xueyi Wang , Northwest Nazarene University, Nampa
Jack Snoeyink , UNC Chapel Hill, Chapel Hill
pp. 525-533

Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops (Abstract)

Peggy Yao , Stanford University, Stanford
Ankur Dhanik , Stanford University, Stanford
Nathan Marz , Stanford University, Stanford
Ryan Propper , Stanford University, Stanford
Charles Kou , Stanford University, Stanford
Guanfeng Liu , Stanford University, Stanford
Henry van den Bedem , SLAC, Menlo Park
Jean-Claude Latombe , Stanford University, Stanford
Inbal Halperin-Landsberg , Stanford University, Stanford
Russ B. Altman , Stanford University, Stanford
pp. 534-545

Learning Scoring Schemes for Sequence Alignment from Partial Examples (Abstract)

Eagu Kim , University of Arizona, Tucson
John Kececioglu , University of Arizona, Tucson
pp. 546-556

Efficient Algorithms for the Computational Design of Optimal Tiling Arrays (Abstract)

Alexander Schliep , MPI for Molecular Genetics, Berlin
Roland Krause , MPI for Molecular Genetics, Berlin
pp. 557-567
Regular Papers

An Introduction to Metabolic Networks and Their Structural Analysis (Abstract)

Vincent Lacroix , CRG, Barcelona
Ludovic Cottret , Université de Lyon - CNRS, Villeurbanne
Patricia Thébault , Université Bordeaux 2 - CNRS, Bordeaux
Marie-France Sagot , INRIA, Villeurbanne
pp. 594-617
Short Papers
TCBB 2008 Annual Index

TCBB 2008 Annual Index (PDF)

pp. Not in print
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