The Community for Technology Leaders
SC Conference (2004)
Pittsburgh, Pennsylvania
Nov. 6, 2004 to Nov. 12, 2004
ISBN: 0-7695-2153-3
TABLE OF CONTENTS
Introduction

Conference Committees (PDF)

pp. xxvi-xxxiii
Applications I

A High Performance Java Middleware with a Real Application (Abstract)

Fabrice Huet , Vrije Universiteit
Denis Caromel , INRIA-I3S-CNRS
Henri E. Bal , Vrije Universiteit
pp. 2

Modernizing Existing Software: A Case Study (Abstract)

C. T. H. Everaars , National Research Institute for Mathematics and Computer Science
B. Koren , National Research Institute for Mathematics and Computer Science
F. Arbab , National Research Institute for Mathematics and Computer Science
pp. 3
Distributed Data Management

Dynamic Metadata Management for Petabyte-Scale File Systems (Abstract)

Sage A. Weil , University of California at Santa Cruz
Kristal T. Pollack , University of California at Santa Cruz
Scott A. Brandt , University of California at Santa Cruz
Ethan L. Miller , University of California at Santa Cruz
pp. 4

Optimal File-Bundle Caching Algorithms for Data-Grids (Abstract)

Doron Rotem , Lawrence Berkeley National Laboratory
Alexandru Romosan , Lawrence Berkeley National Laboratory
Ekow Otoo , Lawrence Berkeley National Laboratory
pp. 6
Grid Services

VMPlants: Providing and Managing Virtual Machine Execution Environments for Grid Computing (Abstract)

Renato J. Figueiredo , University of Florida
José A. B. Fortes , University of Florida
Arijit Ganguly , University of Florida
Jian Zhang , University of Florida
Ivan Krsul , University of Florida
pp. 7

Toward Flexible Messaging for SOAP-Based Services (Abstract)

Savas Parastatidis , University of Newcastle
Shrideep Pallickara , Indiana University
Geoffrey Fox , Indiana University
pp. 8

Supporting Cluster-Based Network Services on Functionally Symmetric Software Architecture (Abstract)

Kai Shen , University of Rochester
Tao Yang , Ask Jeeves Inc. and University of California at Santa Barbara
Lingkun Chu , Ask Jeeves Inc. and University of California at Santa Barbara
pp. 9
Architectural Paradigms

Scientific Computations on Modern Parallel Vector Systems (Abstract)

Jonathan Carter , Lawrence Berkeley National Laboratory
Stephane Ethier , Princeton University
John Shalf , Lawrence Berkeley National Laboratory
Leonid Oliker , Lawrence Berkeley National Laboratory
Andrew Canning , Lawrence Berkeley National Laboratory
pp. 10

Early Experience with Aerospace CFD at JAXA on the Fujitsu PRIMEPOWER HPC2500 (Abstract)

Tomohide Inari , Fujitsu Limited
Katsumi Yazawa , Fujitsu Limited
Naoki Sueyasu , Fujitsu Limited
Masaki Aoki , Fujitsu Limited
Masako Tsuchiya , Japan Aerospace Exploration Agency
Yuichi Matsuo , Japan Aerospace Exploration Agency
pp. 11

Analysis and Modeling of Advanced PIM Architecture Design Tradeoffs (Abstract)

Thomas Sterling , California Institute of Technology
Jay Brockman , University of Notre Dame
Ed Upchurch , California Institute of Technology
pp. 12
Compiler Technology

The Potential of Computation Regrouping for Improving Locality (Abstract)

Chen Ding , University of Rochester
Maksim Orlovich , University of Rochester
pp. 13

Towards a Systematic, Pragmatic and Architecture-Aware Program Optimization Process for Complex Processors (Abstract)

Jean-Marie Verdun , HP France
Albert Cohen , INRIA Futurs and HiPEAC network
David Parello , HP France and HiPEAC network
Olivier Temam , INRIA Futurs, Paris Sud University and HiPEAC network
pp. 15
Scheduling Algorithms

Coscheduling in Clusters: Is It a Viable Alternative? (Abstract)

Andy B. Yoo , Lawrence Livermore National Laboratory
Chita R. Das , Penn State University
Jin-Ha Kim , Penn State University
Deniz Ersoz , Penn State University
Gyu Sang Choi , Penn State University
pp. 16

Resource Management for Rapid Application Turnaround on Enterprise Desktop Grids (Abstract)

Andrew A. Chien , University of California at San Diego
Derrick Kondo , University of California at San Diego
Henri Casanova , University of California at San Diego
pp. 17
Applications II

Scalable Line Dynamics in ParaDiS (Abstract)

Jeff Fier , Lawrence Livermore National Laboratory
Moono Rhee , Lawrence Livermore National Laboratory
Wei Cai , Lawrence Livermore National Laboratory
Meijie Tang , Lawrence Livermore National Laboratory
Kim Yates , Lawrence Livermore National Laboratory
Vasily Bulatov , Lawrence Livermore National Laboratory
Tim Pierce , Lawrence Livermore National Laboratory
Tom Arsenlis , Lawrence Livermore National Laboratory
Masato Hiratani , Lawrence Livermore National Laboratory
Gregg Hommes , Lawrence Livermore National Laboratory
pp. 19

Big Wins with Small Application-Aware Caches (Abstract)

Julio C. López , Carnegie Mellon University
David R. O'Hallaron , Carnegie Mellon University
Tiankai Tu , Carnegie Mellon University
pp. 20

Performance Evaluation of Parallel Large-Scale Lattice Boltzmann Applications on Three Supercomputing Architectures (Abstract)

Ulrich Rüde , University of Erlangen
Nils Thürey , University of Erlangen
Frank Deserno , University of Erlangen
Gerhard Wellein , Regionales Rechenzentrum Erlangen
Peter Lammers , Höchstleistungsrechenzentrum Stuttgart
Thomas Pohl , University of Erlangen
Thomas Zeiser , Regionales Rechenzentrum Erlangen
pp. 21
High Through-put Grid Transport Protocols

Experiences in Design and Implementation of a High Performance Transport Protocol (Abstract)

Xinwei Hong , University of Illinois at Chicago
Yunhong Gu , University of Illinois at Chicago
Robert L. Grossman , University of Illinois at Chicago
pp. 22

Inter-Layer Coordination for Parallel TCP Streams on Long Fat Pipe Networks (Abstract)

Hiroyuki Kamezawa , University of Tokyo
Nao Aoshima , University of Tokyo
Kei Hiraki , University of Tokyo
Makoto Nakamura , University of Tokyo
Mary Inaba , University of Tokyo
Junji Tamatsukuri , University of Tokyo
pp. 24
Applications III

GYRO: A 5-D Gyrokinetic-Maxwell Solver (Abstract)

Mark R. Fahey , Oak Ridge National Laboratory
Jeff Candy , General Atomics
pp. 26

Advanced Computational Fluid Dynamics Simulations of Proiectiles with Flow Control (Abstract)

Jubaraj Sahu , U.S. Army Research Laboratory
Karen R. Heavey , U.S. Army Research Laboratory
pp. 27
Performance Measurement & Optimization

Performance Tool Support for MPI-2 on Linux (Abstract)

Karen L. Karavanic , Portland State University
Kathryn Mohror , Portland State University
pp. 28

Language and Compiler Support for Adaptive Applications (Abstract)

Gagan Agrawal , Ohio State University
Wei Du , Ohio State University
pp. 29

Using Information from Prior Runs to Improve Automated Tuning Systems (Abstract)

Jeffrey K. Hollingsworth , University of Maryland at College Park
I-Hsin Chung , University of Maryland at College Park
pp. 30
Terascale Networking

Realistic Large-Scale Online Network Simulation (Abstract)

Andrew A. Chien , University of California at San Diego
Xin Liu , University of California at San Diego
pp. 31

Collaborative User-Centric Lambda-Grid over Wavelength-Routed Network (Abstract)

Oliver T. Yu , University of Illinois at Chicago
Thomas A. De Fanti , University of Illinois at Chicago
pp. 32

Building Multirail InfiniBand Clusters: MPI-Level Design and Performance Evaluation (Abstract)

Abhinav Vishnu , Ohio State University
Jiuxing Liu , Ohio State University
Dhabaleswar K. Panda , Ohio State University
pp. 33
Extreme Performance

Ultrascalable Implicit Finite Element Analyses in Solid Mechanics with over a Half a Billion Degrees of Freedom (Abstract)

Harun H. Bayraktar , University of California at Berkeley and ABAQUS, Inc.
Panayiotis Papadopoulos , University of California at Berkeley
Mark F. Adams , Sandia National Laboratories
Tony M. Keaveny , University of California at Berkeley
pp. 34

A 15.2 TFlops Simulation of Geodynamo on the Earth Simulator (Abstract)

Satoru Fujihara , Japan Agency for Marine-Earth Science and Technology
Masanori Kameyama , Japan Agency for Marine-Earth Science and Technology
Masaki Yoshida , Japan Agency for Marine-Earth Science and Technology
Akira Kageyama , Japan Agency for Marine-Earth Science and Technology
Yoshinori Tsuda , Japan Agency for Marine-Earth Science and Technology
Mamoru Hyodo , Japan Agency for Marine-Earth Science and Technology
pp. 35

Optimal Blade System Design of a New Concept VTOL Vehicle Uusing the Departmental Computing Grid System (Abstract)

Si Hyoung Park , Seoul National University
Youngha Yoon , Seoul National University
Ji Joong Moon , Seoul National University
Jin Woo Park , Seoul National University
Seung Jo Kim , Seoul National University
In Seong Hwang , Seoul National University
pp. 36
Fault Tolerance

Assessing Fault Sensitivity in MPI Applications (Abstract)

Charng-da Lu , University of Illinois at Urbana-Champaign
Daniel A. Reed , University of North Carolina
pp. 37

Implementation and Evaluation of a Scalable Application-Level Checkpoint-Recovery Scheme for MPI Programs (Abstract)

Daniel Marques , Cornell University
Martin Schulz , Lawrence Livermore National Laboratory
Paul Stodghill , Cornell University
Rohit Fernandes , Cornell University
Greg Bronevetsky , Cornell University
Keshav Pingali , Cornell University
pp. 38

RPC-V: Toward Fault-Tolerant RPC for Internet Connected Desktop Grids with Volatile Nodes (Abstract)

Samir Djilali , Université de Paris Sud
Franck Cappello , Université de Paris Sud
Oleg Lodygensky , Université de Paris Sud
Gilles Fedak , Université de Paris Sud
Tangui Morlier , Université de Paris Sud
Thomas Hérault , Université de Paris Sud
pp. 39
Emerging Architectures

QCDOC: A 10 Teraflops Computer for Tightly-Coupled Calculations (Abstract)

Konstantin Petrov , Brookhaven National Lab and Columbia University
Azusa Yamaguchi , Columbia University
Saul Cohen , Columbia University
Alan Gara , IBM T.J. Watson Research Laboratory
Zhihua Dong , Columbia University
Calin Cristian , Columbia University
Balint Joo , University of Edinburgh
Shigemi Ohta , KEK Japan, RBRC and Brookhaven National Lab
Mike Clark , University of Edinburgh and Columbia University
Tilo Wettig , University of Regensburg
P. A. Boyle , University of Edinburgh and Columbia University
Norman H. Christ , Columbia University
Robert D. Mawhinney , Columbia University
Xiaodong Liao , Columbia University
Dong Chen , IBM T.J. Watson Research Laboratory
Chulwoo Jung , Brookhaven National Lab and Columbia University
Ludmila Levkova , Columbia University
Guofeng Liu , Columbia University
pp. 40

A Performance and Scalability Analysis of the BlueGene/L Architecture (Abstract)

Fabrizio Petrini , Los Alamos National Laboratory
Kei Davis , Los Alamos National Laboratory
Adolfy Hoisie , Los Alamos National Laboratory
Darren J. Kerbyson , Los Alamos National Laboratory
Mike Lang , Los Alamos National Laboratory
Scott Pakin , Los Alamos National Laboratory
Greg Johnson , Los Alamos National Laboratory
pp. 41

Analysis and Performance Results of a Molecular Modeling Application on Merrimac (Abstract)

Jung Ho Ahn , Stanford University
Mattan Erez , Stanford University
Eric Darve , Stanford University
Ankit Garg , Stanford University
William J. Dally , Stanford University
pp. 42
Performance Evaluation Algorithms

Predicting and Evaluating Distributed Communication Performance (Abstract)

Kirk W. Cameron , University of South Carolina
Rong Ge , University of South Carolina
pp. 43

Performance Evaluation of Task Pools Based on Hardware Synchronization (Abstract)

Matthias Korch , University of Bayreuth
Ralf Hoffmann , University of Bayreuth
Thomas Rauber , University of Bayreuth
pp. 44
Advanced Hardware Features

Will Moore's Law Be Sufficient? (Abstract)

Erik P. DeBenedictis , Sandia National Laboratories
pp. 45

Using Hardware Counters to Automatically Improve Memory Performance (Abstract)

Jeffrey K. Hollingsworth , University of Maryland at College Park
Mustafa M. Tikir , University of Maryland at College Park
pp. 46

GPU Cluster for High Performance Computing (Abstract)

Zhe Fan , State University of New York at Stony Brook
Suzanne Yoakum-Stover , State University of New York at Stony Brook
Feng Qiu , State University of New York at Stony Brook
Arie Kaufman , State University of New York at Stony Brook
pp. 47
Applications IV

A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets (Abstract)

Bradley Clymer , Ohio State University
Brent Woods , Ohio State University
Joel Saltz , Ohio State University
Tahsin Kurc , Ohio State University
pp. 48

A Parallel Visualization Pipeline for Terascale Earthquake Simulations (Abstract)

Hongfeng Yu , University of California at Davis
Joel Welling , Pittsburgh Supercomputing Center
Kwan-Liu Ma , University of California at Davis
pp. 49

VIRACOCHA: An Efficient Parallelization Framework for Large-Scale CFD Post-Processing in Virtual Environments (Abstract)

Torsten Kuhlen , RWTH Aachen University
Bernd Hentschel , RWTH Aachen University
Marc Wolter , RWTH Aachen University
Andreas Gerndt , RWTH Aachen University
Christian Bischof , RWTH Aachen University
pp. 50
File Systems

Kosha: A Peer-to-Peer Enhancement for the Network File System (Abstract)

Ali Raza Butt , Purdue University
Yili Zheng , Purdue University
Y. Charlie Hu , Purdue University
Troy A. Johnson , Purdue University
pp. 51

A Self-Organizing Storage Cluster for Parallel Data-Intensive Applications (Abstract)

Aziz Gulbeden , University of California at Santa Barbara
Lingkun Chu , Ask Jeeves
Jingyu Zhou , University of California at Santa Barbara
Tao Yang , Ask Jeeves and University of California at Santa Barbara
Hong Tang , Ask Jeeves
William Strathearn , University of California at Santa Barbara
pp. 52

The Panasas ActiveScale Storage Cluster - Delivering Scalable High Bandwidth Storage (Abstract)

Abbie Matthews , Panasas Inc., Fremont, CA
David Nagle , Panasas Inc., Fremont, CA
Denis Serenyi , Panasas Inc., Fremont, CA
pp. 53
Grid Resource Management

Realistic Modeling and Svnthesis of Resources for Computational Grids (Abstract)

Andrew A. Chien , University of California at San Diego
Henri Casanova , University of California at San Diego
Yang-Suk Kee , University of California at San Diego
pp. 54

The Inca Test Harness and Reporting Framework (Abstract)

Kate Ericson , San Diego Supercomputer Center
Jennifer M. Schopf , Argonne National Laboratory
Shava Smallen , San Diego Supercomputer Center
Pete Beckman , Argonne National Laboratory
Catherine Olschanowsky , San Diego Supercomputer Center
pp. 55

A Peer-to-Peer Replica Location Service Based on a Distributed Hash Table (Abstract)

Min Cai , USC Information Sciences Institute
Martin Frank , USC Information Sciences Institute
Ann Chervenak , USC Information Sciences Institute
pp. 56
Processor & Communication Performance

Unlocking the Performance of the BlueGene/L Supercomputer (Abstract)

George Almasi , IBM Thomas J. Watson Research Center
Siddhartha Chatterjee , IBM Thomas J. Watson Research Center
Bob Walkup , IBM Thomas J. Watson Research Center
Alan Gara , IBM Thomas J. Watson Research Center
José E. Moreira , IBM Thomas J. Watson Research Center
John Gunnels , IBM Thomas J. Watson Research Center
Amy Henning , IBM Thomas J. Watson Research Center
Manish Gupta , IBM Thomas J. Watson Research Center
pp. 57

Data Centric Cache Measurement on the Intel ltanium 2 Processor (Abstract)

Bryan R. Buck , Platform Logic
Jeffrey K. Hollingsworth , University of Maryland at College Park
pp. 58
Invited Speakers

High Performance Computing in Context (PDF)

Charles J. Holland , United States Department of Defense
pp. 60

Toward a High Performance Computing Economy (PDF)

Stan Ahalt , Ohio Supercomputer Center
pp. 61

Computing - An Intellectual Lever for Multidisciplinary Discovery (PDF)

Daniel A. Reed , Renaissance Computing Institute Duke, University of North Carolina and North Carolina State University
pp. 63
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