The Community for Technology Leaders
SC Conference (2001)
Denver, Colorado
Nov. 10, 2001 to Nov. 16, 2001
ISBN: 1-58113-293-X
TABLE OF CONTENTS
Architectures
Front Matter

Front Matter (PDF)

pp. i-lvi
Architectures

The Sun Fireplane System Interconnect (Abstract)

Alan Charlesworth , Sun Microsystems, Inc.
pp. 2

Parallel Graphics and Interactivity with the Scaleable Graphics Engine (Abstract)

Kenneth A. Perrine , Pacific Northwest National Laboratory
Donald R. Jones , Pacific Northwest National Laboratory
pp. 3
Software Scalability

Scalable Parallel Application Launch on Cplant™ (Abstract)

Ron Brightwell , Sandia National Laboratories
Lee Ann Fisk , Sandia National Laboratories
pp. 4

Scaling Irregular Parallel Codes with Minimal Programming Effort (Abstract)

Eduard Ayguadé , Universitat Politecnica de Catalunya
Constantine D. Polychronopoulos , University of Illinois at Urbana-Champaign
Dimitrios S. Nikolopoulos , University of Illinois at Urbana-Champaign
pp. 5

A Parallel Java Grande Benchmark Suite (Abstract)

J. Obdr¡žálek , Masaryk University
J. M. Bull , University of Edinburgh
L. A. Smith , University of Edinburgh
pp. 6
Communication Structures

ORT — A Communication Library for Orthogonal Processor Groups (Abstract)

Gudula Rünger , Technische Universität Chemnitz
Thomas Rauber , Universität Halle-Wittenberg
Robert Reilein , Technische Universität Chemnitz
pp. 7

On-the-Fly Calculation and Verification of Consistent Steering Transactions (Abstract)

David W. Miller , University of Georgia
Yin Xiong , University of Georgia
Eileen Kraemer , University of Georgia
Jinhua Guo , University of Georgia
pp. 8

Removing the Overhead from Software-Based Shared Memory (Abstract)

Erik Hagersten , Uppsala University
Zoran Radović , Uppsala University
pp. 9
Material Science Applications

Scalable Atomistic Simulation Algorithms for Materials Research (Abstract)

Priya Vashishta , Louisiana State University
Fuyuki Shimojo , Hiroshima University
Rajiv K. Kalia , Louisiana State University
Timothy J. Campbell , Logicon Inc. and Naval Oceanographic Office Major Shared Resource Center
Aiichiro Nakano , Louisiana State University
Subhash Saini , NASA Ames Research Center
Shuji Ogata , Yamaguchi University
pp. 10

An 8.61 Tflop/s Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM (Abstract)

Tetsu Narumi , RIKEN Genomic Sciences Center
Atsushi Kawai , RIKEN Genomic Sciences Center
Takahiro Koishi , RIKEN Genomic Sciences Center
pp. 11

Multi-teraflops Spin Dynamics Studies of the Magnetic Structure of FeMn/Co Interfaces (Abstract)

B. Ujfalussy , University of Tennessee
T. C. Schulthess , Oak Ridge National Laboratory
X. -G. Zhang , Oak Ridge National Laboratory
T. Dirks , IBM
W. A. Shelton , Oak Ridge National Laboratory
D. M. C. Nicholson , Oak Ridge National Laboratory
G. M. Stocks , Oak Ridge National Laboratory
Yang Wang , Pittsburgh Supercomputer Center
A. Canning , Lawrence Berkeley National Laboratory
pp. 12
Mesh Methods

Achieving Extreme Resolution in Numerical Cosmology Using Adaptive Mesh Refinement: Resolving Primordial Star Formation (Abstract)

Michael L. Norman , University of California aT San Diego
Tom Abel , Harvard-Smithsonian CFA
Greg L. Bryan , Massachusetts Institute of Technology
pp. 13

Multilevel Algorithms for Generating Coarse Grids for Multigrid Methods (Abstract)

George Karypis , University of Minnesota
Irene Moulitsas , University of Minnesota
pp. 15
Computational Grid Portals and Networks

The XCAT Science Portal (Abstract)

Timothy Drews , University of Illinois at Urbana-Champaign
Benjamin Temko , Indiana University
Jay Alameda , National Computational Science Alliance
Eric Webb , University of Illinois at Urbana-Champaign
Madhusudhan Govindaraju , Indiana University
Dennis Gannon , Indiana University
Aleksander Slominski , Indiana University
Richard Alkire , University of Illinois at Urbana-Champaign
Rahul Indurkar , Indiana University
Randall Bramley , Indiana University
Sriram Krishnan , Indiana University
pp. 16

A Jini-Based Computing Portal System (Abstract)

Toyotaro Suzumura , Tokyo Institute of Technology
Hidemoto Nakada , AIST/Tokyo Institute of Technology
Satoshi Matsuoka , Tokyo Institute of Technology
pp. 17

Efficient Network and I/O Throttling for Fine-Grain Cycle Stealing (Abstract)

Peter J. Keleher , University of Maryland at College Park
Jeffrey K. Hollingsworth , University of Maryland at College Park
Kyung D. Ryu , Arizona State University
pp. 18
Computational Grid I/O

LegionFS: A Secure and Scalable File System Supporting Cross-Domain High-Performance Applications (Abstract)

Andrew S. Grimshaw , University of Virginia
Brian S. White , University of Virginia
Michael Walker , University of Virginia
Marty Humphrey , University of Virginia
pp. 19

High-Performance Remote Access to Climate Simulation Data: A Challenge Problem for Data Grid Technologies (Abstract)

Bob Drach , Lawrence Livermore National Laboratory
Ewa Deelman , University of Southern California
Jason Lee , Lawrence Berkeley National Laboratory
Dean Williams , Lawrence Livermore National Laboratory
Arie Shoshani , Lawrence Berkeley National Laboratory
Alex Sim , Lawrence Berkeley National Laboratory
Bill Allcock , Argonne National Laboratory
Carl Kesselman , University of Southern California
Ian Foster , Argonne National Laboratory
Veronika Nefedova , Argonne National Laboratory
Ann Chervenak , University of Southern California
pp. 20

Gathering at the Well: Creating Communities for Grid I/O (Abstract)

Andrea Arpaci-Dusseau , University of Wisconsin - Madison
John Bent , University of Wisconsin - Madison
Remzi Arpaci-Dusseau , University of Wisconsin - Madison
Miron Livny , University of Wisconsin - Madison
Douglas Thain , University of Wisconsin - Madison
pp. 21
Algorithmic Load Balancing

Large Scale Parallel Structured AMR Calculations Using the SAMRAI Framework (Abstract)

Andrew M. Wissink , Lawrence Livermore National Laboratory
Richard D. Hornung , Lawrence Livermore National Laboratory
Scott R. Kohn , Lawrence Livermore National Laboratory
Noah Elliott , Lawrence Livermore National Laboratory
Steve S. Smith , Lawrence Livermore National Laboratory
pp. 22

Dynamic Load Balancing of SAMR Applications on Distributed Systems (Abstract)

Greg Bryan , Massachusetts Institute of Technology
Zhiling Lan , Northwestern University
Valerie E. Taylor , Northwestern University
pp. 24
Sea, Wind, and Fire

Coastal Ocean Modeling of the U.S. West Coast with Multiblock Grid and Dual-Level Parallelism (Abstract)

Le N. Ly , Naval Postgraduate School
Phu Luong , Major Shared Resource Center
Clay P. Breshears , KAI Software, a Division of Intel Americas, Inc.
pp. 25

Terascale Spectral Element Dynamical Core for Atmospheric General Circulation Models (Abstract)

Richard D. Loft , National Center for Atmospheric Research
Stephen J. Thomas , National Center for Atmospheric Research
John M. Dennis , National Center for Atmospheric Research
pp. 26

High Resolution Weather Modeling for Improved Fire Management (Abstract)

Kevin Roe , Maui High Performance Computing Center
Duane Stevens , University of Hawaii at Manoa
Carol McCord , Maui High Performance Computing Center
pp. 27
Reconfigurable Architectures

Parallel Dedicated Hardware Devices for Heterogeneous Computations (Abstract)

Vittorio Rosato , Casaccia Research Centre
Paolo Palazzari , Casaccia Research Centre
pp. 29

Cost Effectiveness of an Adaptable Computing Cluster (Abstract)

Walter B. Ligon, III , Clemson University
Keith D. Underwood , Clemson University
Ron R. Sass , Clemson University
pp. 30
Groundbreaking Applications

Parallel Implementation and Performance of FastDNAml — A Program for Maximum Likelihood Phylogenetic Inference (Abstract)

Craig A. Stewart , Indiana University
Donald K. Berry , Indiana University
William Fischer , Indiana University
David Hart , Indiana University
Eric A. Wernert , Indiana University
Gary J. Olsen , University of Illinois Urbana/Champaign
pp. 32

Modeling of Seismic Wave Propagation at the Scale of the Earth on a Large Beowulf (Abstract)

Jeroen Tromp , California Institute of Technology
Dimitri Komatitsch , California Institute of Technology
pp. 33
Information Retrieval and Transaction Processing

Efficient Execution of Multiple Query Workloads in Data Analysis Applications (Abstract)

Henrique Andrade , University of Maryland at College Park
Tahsin Kurc , Ohio State University
Alan Sussman , University of Maryland at College Park
Joel Saltz , Ohio State University
pp. 34

Compressing Inverted Files in Scalable Information Systems by Binary Decision Diagram Encoding (Abstract)

Tien-Fu Chen , National Chung Cheng University
Chung-Hung Lai , National Chung Cheng University
pp. 36
Performance Prediction

On Using SCALEA for Performance Analysis of Distributed and Parallel Programs (Abstract)

Sameer Shende , University of Oregon
Georg Madsen , Technical University Vienna
Hong-Linh Truong , University of Vienna
Hans Moritsch , University of Vienna
Thomas Fahringer , University of Vienna
Allen D. Malony , University of Oregon
pp. 37

Predictive Performance and Scalability Modeling of a Large-Scale Application (Abstract)

D.J. Kerbyson , Los Alamos National Laboratory
H.J. Alme , Los Alamos National Laboratory
F. Petrini , Los Alamos National Laboratory
H.J. Wasserman , Los Alamos National Laboratory
M. Gittings , SAIC and Los Alamos National Laboratory
A. Hoisie* , Los Alamos National Laboratory
pp. 39
Algorithms

Stochastic Search for Signal Processing Algorithm Optimization (Abstract)

Bryan Singer , Carnegie Mellon University
Manuela Veloso , Carnegie Mellon University
pp. 41
Novel Graphics and Grids

Fast Matrix Multiplies Using Graphics Hardware (Abstract)

David McAllister , University of North Carolina at Chapel Hill
E. Scott Larsen , University of North Carolina at Chapel Hill
pp. 43

Next-Generation Visual Supercomputing Using PC Clusters with Volume Graphics Hardware Devices (Abstract)

Kenji Koshizuka , Mitsubishi Precision Co., Ltd., Japan
Yasutada Nagano , Mitsubishi Precision Co., Ltd., Japan
Kazuro Shimokawa , The National Institute of Advanced Industrial Science and Technology (AIST), Japan
Masato Ogata , Mitsubishi Precision Co., Ltd., Japan
Xuezhen Liu , Mitsubishi Precision Co., Ltd., Japan
Kagenori Kajihara , Mitsubishi Precision Co., Ltd., Japan
Shigeru Muraki , The National Institute of Advanced Industrial Science and Technology (AIST), Japan
Kwan-Liu Ma , University of California, Davis, U.S.A.
pp. 44
Computational Grid Applications

Applying Scheduling and Tuning to On-Line Parallel Tomography (Abstract)

Francine Berman , University of California at San Diego
Henri Casanova , University of California at San Diego
Shava Smallen , University of California at San Diego
pp. 46

An Automatic Design Optimization Tool and its Application to Computational Fluid Dynamics (Abstract)

Andrew Lewis , Griffith University
David Abramson , Monash University
Tom Peachey , Monash University
Clive Fletcher , University of New South Wales
pp. 47

Numerical Libraries And The Grid: The GrADS Experiments With ScaLAPACK (Abstract)

Susan Blackford , University of Tennessee
Antoine Petitet , Sun France Benchmark Center
Sathish Vadhiyar , University of Tennessee
Brett Ellis , University of Tennessee
Graham Fagg , University of Tennessee
Kenneth Roche , University of Tennessee
Jack Dongarra , University of Tennessee
pp. 48
Networking

EMP: Zero-Copy OS-Bypass NIC-Driven Gigabit Ethernet Message Passing (Abstract)

Piyush Shivam , Ohio State University
Dhabaleswar Panda , Ohio State University
Pete Wyckoff , Ohio Supercomputer Center
pp. 49

Design and Implementation of FMPL, a Fast Message-Passing Library for Remote Memory Operations (Abstract)

Yoshiyuki Hayashida , Hitachi, Ltd.
Hisayoshi Kitabayashi , Hitachi Business Solution
Osamu Tatebe , National Institute of Advanced Industrial Science and Technology
Umpei Nagashima , National Institute of Advanced Industrial Science and Technology
Satoshi Sekiguchi , National Institute of Advanced Industrial Science and Technology
pp. 50

A New Routing Mechanism for Networks with Irregular Topology (Abstract)

R. Beivide , University of Cantabria
J.A. Gregorio , University of Cantabria
F. Vallejo , University of Cantabria
V. Puente , University of Cantabria
A. Ibañez , University of Cantabria
pp. 51
Computational Grid Environments and Security

Supporting Efficient Execution in Heterogeneous Distributed Computing Environments with Cactus and Globus (PDF)

Matei Ripeanu , The University of Chicago
Brian Toonen , Argonne National Laboratory
Gabrielle Allen , Max Planck Institute for Gravitational Physics
Ian Foster , Argonne National Laboratory and The University of Chicago
Nicholas T. Karonis , Northern Illinois University and Argonne National Laboratory
Edward Seidel , Max Planck Institute for Gravitational Physics
pp. 52

Optimizing of Component-Based Applications within a Grid Environment (Abstract)

Anthony Mayer , Imperial College of Science, Technology and Medicine
Nathalie Furmento , Imperial College of Science, Technology and Medicine
Tony Field , Imperial College of Science, Technology and Medicine
Stephen McGough , Imperial College of Science, Technology and Medicine
John Darlington , Imperial College of Science, Technology and Medicine
Steven Newhouse , Imperial College of Science, Technology and Medicine
pp. 53

Adapting Globus and Kerberos for a Secure ASCI Grid (Abstract)

Patrick C. Moore , Sandia National Laboratories
Richard J. Detry , Sandia National Laboratories
Wilbur R. Johnson , Sandia National Laboratories
pp. 54
Efficient Layouts for Hierarchical Memories

A Ghost Cell Expansion Method for Reducing Communications in Solving PDE Problems (Abstract)

Yun He , Lawrence Berkeley National Laboratory
Chris Ding , Lawrence Berkeley National Laboratory
pp. 55

Improving Parallel Irregular Reductions Using Partial Array Expansion (Abstract)

Eladio Gutiérrez , University of Málaga
Oscar Plata , University of Málaga
Emilio L. Zapata , University of Málaga
pp. 56

Increasing Temporal Locality with Skewing and Recursive Blocking (Abstract)

John Mellor-Crummey , Rice University
Guohua Jin , Rice University
Robert Fowler , Rice University
pp. 57
Fast I/O

MPI-IO/GPFS, an Optimized Implementation of MPI-IO on Top of GPFS (Abstract)

Alice Koniges , Lawrence Livermore National Laboratory
Bin Jia , IBM Poughkeepsie
Jean-Pierre Prost , IBM T.J. Watson Research Center
Richard Treumann , IBM Poughkeepsie
Richard Hedges , Lawrence Livermore National Laboratory
pp. 58

A Case Study in Application I/O on Linux Clusters (Abstract)

Robert Ross , Argonne National Laboratory
Daniel Nurmi , Argonne National Laboratory
Albert Cheng , University of Illinois at Urbana-Champaign
Michael Zingale , University of Chicago
pp. 59

The Design of I/O-Efficient Sparse Direct Solvers (Abstract)

Florin Dobrian , Old Dominion University and NASA Langley Research Center
Alex Pothen , Old Dominion University and NASA Langley Research Center
pp. 60
105 ms
(Ver 3.1 (10032016))