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16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007) (2007)
Brasov, Romania
Sept. 15, 2007 to Sept. 19, 2007
ISSN: 1089-795X
ISBN: 0-7695-2944-5
pp: 425
Harald Servat , Barcelona Supercomputing Center, Spain
Cecilia Gonzalez , Universitat Politecnica de Catalunya, Spain
Xavier Aguilar , Barcelona Supercomputing Center, Spain
Daniel Cabrera , Universitat Politecnica de Catalunya, Spain
Daniel Jimenez , Universitat Politecnica de Catalunya, Spain
ABSTRACT
We evaluate a well known protein docking application in the Bioinformatic field, Fourier Transform Docking (FTDock) [1], on a Blade with two 3.2GHz Cell Broadband Engine (BE) processor [2]. FTDock is a geometry complementary approximation of the protein docking problem, and uses 3D FFTs to reduce the complexity of the algorithm.
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CITATION

X. Aguilar, D. Jimenez, D. Cabrera, H. Servat and C. Gonzalez, "Drug Design on the Cell BroadBand Engine," 16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007)(PACT), Brasov, Romania, 2007, pp. 425.
doi:10.1109/PACT.2007.26
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