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Proceedings of the 22nd International Conference on Parallel Architectures and Compilation Techniques (2007)
Brasov, Romania
Sept. 15, 2007 to Sept. 19, 2007
ISSN: 1089-795X
ISBN: 0-7695-2944-5
pp: 425
Xavier Aguilar , Barcelona Supercomputing Center, Spain
Daniel Jimenez , Universitat Politecnica de Catalunya, Spain
Daniel Cabrera , Universitat Politecnica de Catalunya, Spain
Harald Servat , Barcelona Supercomputing Center, Spain
Cecilia Gonzalez , Universitat Politecnica de Catalunya, Spain
ABSTRACT
We evaluate a well known protein docking application in the Bioinformatic field, Fourier Transform Docking (FTDock) [1], on a Blade with two 3.2GHz Cell Broadband Engine (BE) processor [2]. FTDock is a geometry complementary approximation of the protein docking problem, and uses 3D FFTs to reduce the complexity of the algorithm.
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CITATION
Xavier Aguilar, Daniel Jimenez, Daniel Cabrera, Harald Servat, Cecilia Gonzalez, "Drug Design on the Cell BroadBand Engine", Proceedings of the 22nd International Conference on Parallel Architectures and Compilation Techniques, vol. 00, no. , pp. 425, 2007, doi:10.1109/PACT.2007.26
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