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Parallel and Distributed Processing Symposium, International (2005)
Denver, Colorado
Apr. 4, 2005 to Apr. 8, 2005
ISSN: 1530-2075
ISBN: 0-7695-2312-9
TABLE OF CONTENTS
Workshop on High Performance Computational Biology - HiCOMB

ESTmapper: Efficiently Aligning DNA Sequences to Genomes (Abstract)

Woei-Jyh (Adam) Lee , University of Maryland at College Park
Xue Wu , University of Maryland at College Park
Chau-Wen Tseng , University of Maryland at College Park
pp. 196a

RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation (Abstract)

Krishna Muriki , Clemson University, SC
Ron Sass , University of Kansas, Lawrence
Keith D. Underwood , Sandia National Labs, Albuquerque, NM
pp. 196b

Comparison of Current BLAST Software on Nucleotide Sequences (Abstract)

I. Elizabeth Cha , University of Louisville Department of Computer, KY
Eric C. Rouchka , University of Louisville Department of Computer, KY
pp. 197a

A Case Study on Pattern-Based Systems for High Performance Computational Biology (Abstract)

Bertil Schmidt , Nanyang Technological University
Weiguo Liu , Nanyang Technological University
pp. 197b

BioFilter: An Architecture for Parallel Deployment and Dynamic Chaining of Standalone Bioinformatics Tools (Abstract)

Thomas Brettin , Los Alamos National Laboratory, NM
Avinash Kewalramani , Los Alamos National Laboratory, NM
pp. 198a

An Efficient Program for Phylogenetic Inference Using Simulated Annealing (Abstract)

Alexandros Stamatakis , Foundation for Research and Technology-Hellas, Greece
pp. 198b

High-Performance Direct Pairwise Comparison of Large Genomic Sequences (Abstract)

Christopher Mueller , Indiana University, Bloomington, IN
Mehmet Dalkilic , Indiana University, Bloomington, IN
Andrew Lumsdaine , Indiana University, Bloomington, IN
pp. 199a

Statistical Methods for the Discovery of Co-Operative Transcription Factors: The Co-bind Code Revised (Abstract)

Alessandro Marongiu , ENEA, Informatic Unit, Portici, Rome
Vittorio Rosato , ENEA, Computing and Modeling Unit, Rome
Giovanni Lavorgna , Hospital San Raffaele, Milan
Paolo Verrecchia , Albatel SpA, Rome
Paolo Palazzari , ENEA, Computing and Modeling Unit, Rome
Simone Melchionna , Albatel SpA - Rome and INFM University "La Sapienza", Rome
pp. 199b

FROST: Revisited and Distributed (Abstract)

Antoine Marin , INRA, France
Jean-Fran?ois Gibrat , INRA, France
Vincent Poirriez , Universit? de Valenciennes, France
Rumen Andonov , IRISA, Campus de Beaulieu, France
pp. 200a

Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing (Abstract)

A. Kerstens , The Scripps Research Institute, La Jolla, California
M. Taufer , The Scripps Research Institute, La Jolla, California; University of California at San Diego; University of Texas at El Paso
C. An , The Scripps Research Institute, La Jolla, California; University of California at San Diego
C.L. Brooks III , The Scripps Research Institute, La Jolla, California; University of California at San Diego
pp. 200b
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