The Community for Technology Leaders
2013 IEEE 3rd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) (2011)
Orlando, FL, USA
Feb. 3, 2011 to Feb. 5, 2011
ISBN: 978-1-61284-851-8
TABLE OF CONTENTS
Papers

[Front cover] (PDF)

pp. c1

Message from the General Chair (PDF)

Sanguthevar Rajasekaran , University of Connecticut, USA
pp. ii-vi

Keynote: High-resolution sequence and chromatin signatures predict transcription factor binding in the human genome (Abstract)

Christina Leslie , Computational Biology Program, Memorial Sloan-Kettering Cancer Center, New York, USA
pp. 2

Keynote: DNA-based molecular devices (Abstract)

John H. Reif , Dept of Computer Science, Duke University, Durham, NC USA
pp. 3

Invited: A novel perspective in algorithmic combinatorial methods for phasing populations in a coalescent model (Abstract)

Paola Bonizzoni , Univ. di Milano-Bicocca, Dipartimento di Informatica Sistemistica e Comunicazione, via Bicocca degli Arcimboldi 8, 20126, Milan, Italy
pp. 4

Invited: Fast and theoretically strong algorithms for kinship discovery (Abstract)

Daniel G. Brown , Cheriton School of Computer Science, University of Waterloo, Ontario, Canada
pp. 5

Invited: Reconciled gene trees and their applications (Abstract)

Oliver Eulenstein , Department of Computer Science, Iowa State University, Ames, USA
pp. 6

Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs (Abstract)

Shinichi Morishita , Department of Computational Biology, University of Tokyo, Japan
pp. 7

Invited: Comparative microbial genomics (Abstract)

Giri Narasimhan , Bioinformatics Research Group (BioRG), School of Computing and Information Sciences, Florida International University, Miami, 33199, USA
pp. 8

Invited: Challenges in metagenomic assembly (Abstract)

Mihai Pop , Department of Computer Science, University of Maryland, College Park, USA
pp. 9

PIntron: A fast method for gene structure prediction via maximal pairings of a pattern and a text (Abstract)

Paola Bonizzoni , Dip. Informatica Sistemistica e Comunicazione (DISCo), Univ. Milano-Bicocca, Milan, Italy
Raffaella Rizzi , Dip. Informatica Sistemistica e Comunicazione (DISCo), Univ. Milano-Bicocca, Milan, Italy
Gianluca Della Vedova , Dip. Statistica, Univ. Milano-Bicocca, Milan, Italy
Yuri Pirola , Dip. Informatica Sistemistica e Comunicazione (DISCo), Univ. Milano-Bicocca, Milan, Italy
pp. 33-39

InfoBarcoding: Selection of non-contiguous sites in molecular biomarker (Abstract)

Peter S.C. Xu , David R. Cheriton School of Computer Science, University of Waterloo, Canada
David K.Y. Chiu , Dept. Computer Science, University of Guelph, Canada
pp. 69-74

Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data (Abstract)

Pramod K. Srivastava , University of Connecticut Health Center, 263 Farmington Avenue, Farmington, 06030-1601, USA
Jorge Duitama , Department of Computer Science & Engineering, University of Connecticut, 371 Fairfield Rd., Unit 2155, Storrs, 06269-2155, USA
Ion I. Mandoiu , Department of Computer Science & Engineering, University of Connecticut, 371 Fairfield Rd., Unit 2155, Storrs, 06269-2155, USA
pp. 87-92

Redundant interactions in protein rigid cluster analysis (Abstract)

Naomi Fox , Computer Science Department, UMass, Amherst, MA, USA
Ileana Streinu , Smith College, Northampton, MA, USA
pp. 99-104

Poster: Modelling the tumor shrinkage pharmacodynamics with BlenX (Abstract)

O. Kahramanogullari , The Microsoft Research - University of Trento, Centre for Computational and Systms Biology, Povo, Italy
C. Priami , The Microsoft Research - University of Trento, Centre for Computational and Systms Biology, Povo, Italy
D. Morpurgo , The Microsoft Research - University of Trento, Centre for Computational and Systms Biology, Povo, Italy
Ross A. Soo , Department of Haematology-Oncology, National University Hospital, Singapore
P. Lecca , The Microsoft Research - University of Trento, Centre for Computational and Systms Biology, Povo, Italy
pp. 251

Workshop: Inferring viral population from ultra-deep sequencing data (Abstract)

Irina Astrovskaya , Department of Computer Science, Georgia State University, Atlanta, USA
pp. 267

Workshop: Can you assemble whole genomes from next generation sequencing data? (Abstract)

Mihai Pop , Department of Computer Science, University of Maryland, College Park, USA
pp. 273

Workshop: Efficient sequential and parallel algorithms for sequence assembly (Abstract)

Hieu Dinh , Computer Science and Engineering Department, University of Connecticut, Storrs, U.S.A, 06269
Vamsi Kundeti , Computer Science and Engineering Department, University of Connecticut, Storrs, U.S.A, 06269
Sanguthevar Rajasekaran , Computer Science and Engineering Department, University of Connecticut, Storrs, U.S.A, 06269
pp. 274

Workshop: Characterization of structural variants with next generation DNA sequencing (Abstract)

Anna Ritz , Brown University, Providence, RI, USA
Ali Bashir , Pacific Biosciences, Menlo Park, CA USA
Benjamin Raphael , Brown University, Providence, RI, USA
Suzanne Sindi , Brown University, Providence, RI, USA
pp. 275

Workshop: Targeting mechanism of epigenetic factors (Abstract)

Guo-Cheng Yuan , Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, USA
pp. 278

Author index (PDF)

pp. 280-282
106 ms
(Ver )