The Community for Technology Leaders
High Performance Computing and Grid in Asia Pacific Region, International Conference on (2004)
Omiya Sonic City, Tokyo, Japan
July 20, 2004 to July 22, 2004
ISBN: 0-7695-2138-X
TABLE OF CONTENTS

Organization (PDF)

pp. xvi-xvii

Acknowledgments (PDF)

pp. xviii
Session 1: Grid Middleware

A Failure Recovery Mechanism for Distributed Metadata Servers in DCFS2 (Abstract)

Jie Ma , Chinese Academy of Sciences
Zhihua Fan , Chinese Academy of Sciences
Jin Xiong , Chinese Academy of Sciences
pp. 2-8

The Design and Implementation of a Fault-Tolerant RPC System: Ninf-C (Abstract)

Yoshio Tanaka , National Institute of Advanced Industrial, Japan
Hidemoto Nakada , National Institute of Advanced Industrial, Japan
Satoshi Sekiguchi , National Institute of Advanced Industrial, Japan
Satoshi Matsuoka , Tokyo Institute of Technology, Japan
pp. 9-18

Simplified Grid Computing through Spreadsheets and NetSolve (Abstract)

Paul Roe , Queensland University of Technology, Australia
Eric Meek , University of Tennessee, Knoxville, USA
Zhiao Shi , University of Tennessee, Knoxville, USA
Jack Dongarra , University of Tennessee, Knoxville, USA
David Abramson , Monash University, Australia
pp. 19-24
Session 2: Grid Portal

GridSpeed: A Web-based Grid Portal Generation Server (Abstract)

Toyotaro Suzumura , Tokyo Institute of Technology, and Japan Society for the Promotion of Science
Satoshi Matsuoka , Tokyo Institute of Technology, and National Institute of Informatics
Henri Casanova , University of California, San Diego
Hidemoto Nakada , Tokyo Institute of Technology, and National Institute of Advanced Industrial Science and Technology
pp. 26-33

Grid PSE Builder: A Framework for Building Web-based Distributed PSE on Grid (Abstract)

Yoshio Tanaka , National Institute of Advanced Industrial Science and Technology
Satoshi Sekiguchi , National Institute of Advanced Industrial Science and Technology
Hiroshi Takemiya , National Institute of Advanced Industrial Science and Technology
Satoshi Itoh , National Institute of Advanced Industrial Science and Technology
Motonori Hirano , Software Research Associates, Inc., Japan
Naotaka Yamamoto , National Institute of Advanced Industrial Science and Technology
pp. 34-41
Session 3: Grid Tools

Relis-G: Remote Library Install System for Computational Grids (Abstract)

Mitsuhisa Sato , University of Tsukuba, Japan
Yoshio Tanaka , National Institute of Advanced Industrial Science and Technology, Japan
Toshitsugu Yuba , University of Electro-Communications, Japan
Hiromasa Watanabe , University of Electro-Communications, Japan
Hiroki Honda , University of Electro-Communications, Japan
pp. 44-53

Performance Evaluation in Computational Grid Environments (Abstract)

Liang Peng , Sun Microsystems Inc.
Hoon Kang Neo , Sun Microsystems Inc.
Jie Song , Sun Microsystems Inc.
Yueqin Jiang , Sun Microsystems Inc.
Simon See , Nanyang Technological University, Singapore
Appie Stoelwinder , Sun Microsystems Inc.
pp. 54-62

An OGSI-compliant Grid Information Service - Its Architecture and Performance Study (Abstract)

Constantine Katsinis , Drexel University, USA
Tianyi Zang , Institute of High Performance Computing, Singapore
Wei Jie , Institute of High Performance Computing, Singapore
Stephen J. Turner , Nanyang Technological University, Singapore
Wentong Cai , Nanyang Technological University, Singapore
Zhou Lei , Institute of High Performance Computing, Singapore
Terence Hung , Institute of High Performance Computing, Singapore
Ming Zhu , Drexel University, USA
pp. 63-71
Session 4: P2P and Grid

A Framework for Automatic and Secure Cycle Stealing (Abstract)

Paul Roe , Queensland University of Technology
Wayne Kelly , Queensland University of Technology
pp. 74-80

A Parallel Distributed Application of the Wireless Sensor Network (Abstract)

R. S. Spindler , Monash University, Australia
M. Isreb , Monash University, Australia
A. I. Khan , Monash University, Australia
pp. 81-88

GridView: A Dynamic and Visual Grid Monitoring System (Abstract)

Li Bo , Chinese Academy of Sciences, Beijing, P.R. China
Ni Guangbao , Chinese Academy of Sciences, Beijing, P.R. China
Ma Jie , Chinese Academy of Sciences, Beijing, P.R. China
pp. 89-92

Web-published Data Searching System for GRID Environment (Abstract)

Hyeongwoo Park , Korea Institute of Science and Technology Information
Jaeyoung Choi , Soongsil University, Seoul, Korea
Seogchan Hwang , Soongsil University, Seoul, Korea
Sangkeon Lee , Soongsil University, Seoul, Korea
pp. 93-96
Session 5: Communication Layer

The Parallel Communication Protocol in BCL-4 (Abstract)

Dan Meng , Chinese Academy of Sciences, Beijing, P.R. China
Xiaocheng Zhou , Chinese Academy of Sciences, Beijing, P.R. China
Jie Ma , Chinese Academy of Sciences, Beijing, P.R. China
Zhigang Huo , Chinese Academy of Sciences, Beijing, P.R. China
pp. 98-103

PM/InfiniBand-FJ: A High Performance Communication Facility Using InfiniBand for Large Scale PC Clusters (Abstract)

Kouichi Kumon , Fujitsu Laboratories Ltd., Japan
Kouji Hosoe , Fujitsu Limited, Japan
Akira Naruse , Fujitsu Laboratories Ltd., Japan
Toshiyuki Shimizu , Fujitsu Limited, Japan
Shinji Sumimoto , Fujitsu Laboratories Ltd., Japan
pp. 104-113

Exploring Collective Communications on A Cluster of SMPs (Abstract)

Meng-Shiou Wu , Ames Laboratory, U.S. DOE, Ames, IA
Ricky A. Kendall , Ames Laboratory, U.S. DOE, Ames, IA
Srinivas Aluru , Department of Computer Science, Ames, IA
pp. 114-117
Session 6: MPI

Design, Implementation and Performance of Fault-Tolerant Message Passing Interface (MPI) (Abstract)

R. Pitchiah , Electronics Niketan, New Delhi, India
A. David Selvakumar , Real-Time Systems Group, Road, Bangalore
P. M. Sobha , Real-Time Systems Group, Road, Bangalore
G. C. Ravindra , Real-Time Systems Group, Road, Bangalore
pp. 120-129

DMLoader: a Scalable MPI Task Loader on Dawning Supercomputers (Abstract)

Dan Meng , Chinese Academy of Science (CAS), Beijing
Bibo Tu , Chinese Academy of Science (CAS), Beijing
Taoying Liu , Chinese Academy of Science (CAS), Beijing
pp. 130-135
Session 7: Numerical Algorithm

An Improvement of SAINV and RIF Preconditionings of CG Method by Double Dropping Strategy (Abstract)

Seiji Fujino , Kyushu University, Japan
Yusuke Ikeda , Kyushu University, Japan
pp. 142-149
Session 8: HPC Architecture

An Effective Instruction Fetch Policy for Simultaneous Multithreaded Processors (Abstract)

Liqiang He , Chinese Academy of Sciences, Beijing, China
Zhiyong Liu , Chinese Academy of Sciences, Beijing, China
pp. 162-168

Queue Processor Architecture for Novel Queue Computing Paradigm Based on Produced Order Scheme (Abstract)

Tsutomu Yoshinaga , The University of electro-Communications, Japan
Soichi Shigeta , The University of electro-Communications, Japan
Ben A. Abderazek , The University of electro-Communications, Japan
Masahiro Sowa , The University of electro-Communications, Japan
M. Arsenji , The University of electro-Communications, Japan
pp. 169-177

Multi-Grain Remote Access Cache in NUMA System (Abstract)

Jong Wook Kwak , Seoul National University
Cheol Hong Kim , Seoul National University
Chu Shik Jhon , Seoul National University
Seong Tae Jhang , The University of Suwon
pp. 178-185
Session 9: HPC Application (1)

Parallel Fast Algorithm for Large-scale Electromagnetic Scattering (Abstract)

Zaw Zaw Oo , Institute of High Performance Computing, Singapore
Erping Li , Institute of High Performance Computing, Singapore
Yaojiang Zhang , Institute of High Performance Computing, Singapore
Fang Wu , Institute of High Performance Computing, Singapore
pp. 188-194

An Evaluation of Advanced Multi-Components Expansion Method of LBM on Parallel Computer (Abstract)

Yuichi Hirokawa , Japan Advanced Institute of Science and Technology
Teruo Matsuzawa , Japan Advanced Institute of Science and Technology
pp. 195-202
Session 10: HPC Application (2)

Lattice Boltzmann Simulation and Its Concurrent Visualization on the SX-6 Supercomputer (Abstract)

N. Masuda , NEC Corporation, Tokyo, Japan
H. Takahara , NEC Corporation, Tokyo, Japan
T. Takei , NEC Corporation, Tokyo, Japan
J. Bernsdorf , NEC Europe Ltd., Germany
pp. 212-219

Crossover of the Behavior of Surface Waves in a Vibrated Granular Material (Abstract)

Youngkyun Jung , Korea Institute of Science and Technology Information
Jysoo Lee , Korea Institute of Science and Technology Information
pp. 220-225

Scaling Evaluation of the Lattice Solid Model on the SGI Altix 3700 (Abstract)

Steffen Abe , The University of Queensland, Australia
Matt Davies , The University of Queensland, Australia
Shane Latham , The University of Queensland, Australia
pp. 226-233
Session 11: HPC Application (3)

Scripting High Performance Earth Systems Simulations on the SGI Altix 3700 (Abstract)

Lutz Gross , The University of Queensland, Brisbane, Australia
Hans M?hlhaus , The University of Queensland, Brisbane, Australia
Matt Davies , The University of Queensland, Brisbane, Australia
pp. 244-251

Implementations and Performance of Nonlinear CG Methods by TAO on Dawning2000 (Abstract)

Jian Wang , Chinese Academy of Sciences, Beijing, P.R. China
Tongxiang Gu , Institute of Applied Physics and Computational Mathematics, Beijing, P.R. China
Xuebin Chi , Chinese Academy of Sciences, Beijing, P.R. China
pp. 252-255
Session 12: HPC Application (4)

A Parallel Semi-Coarsening Multigrid Algorithm for Solving the Reynolds-Averaged Navier-Stokes Equations (Abstract)

Putchong Uthayopas , Kasetsart University, Bangkok, Thailand
Kiattisak Ngiamsoongnirn , Suranaree University of Technology, Thailand
Ekachai Juntasaro , Suranaree University of Technology, Thailand
Varangrat Juntasaro , Kasetsart University, Bangkok, Thailand
pp. 258-266

Development of a High-performance Domain-wise Parallel Direct Solver for Large-scale Structural Analysis (Abstract)

Jeong Ho Kim , KISTI, Korea
Seung Jo Kim , Seoul National University, Korea
Chang Sung Lee , SAMSUNG Electronics, Korea
pp. 267-274

Simulation of Free Surface by Surface Capturing Method (Abstract)

W. Y. Chang , National Center for High-Performance Computing, Hsinchu, Taiwan
C. L. Yen , Hydrotech Research Institute, National Taiwan University, Taipei, Taiwan
L. C. Lee , National Center for High-Performance Computing, Hsinchu, Taiwan
J. S. Lai , Hydrotech Research Institute, National Taiwan University, Taipei, Taiwan
R. J. Shih , National Center for High-Performance Computing, Hsinchu, Taiwan
W. F. Tsai , National Center for High-Performance Computing, Hsinchu, Taiwan
H. C. Lien , National Center for High-Performance Computing, Hsinchu, Taiwan
pp. 275-278
Session 13: Visualization

VIsualization for HPC Data - Large Terrain Model (Abstract)

San-Liang Chu , National Center for High-performance Computing, Hsinchu, Taiwan
Bo-Yin Li , National Center for High-performance Computing, Hsinchu, Taiwan
Charlie H. Chang , National Center for High-performance Computing, Hsinchu, Taiwan
Horng-Shyang Liao , National Center for High-performance Computing, Hsinchu, Taiwan
pp. 280-284

Application of Virtual Reality in Ecological Farmland Navigating System (Abstract)

Chen-Pey Huang , National Center for High-performance Computing, Hsinchu, Taiwan
Chia-Chen Kuo , National Center for High-performance Computing, Hsinchu, Taiwan
Cherng-Yeu Shen , National Center for High-performance Computing, Hsinchu, Taiwan
Whey-Fone Tsai , National Center for High-performance Computing, Hsinchu, Taiwan
Yi-Haur Shiau , National Center for High-performance Computing, Hsinchu, Taiwan
pp. 285-288

3D VR Engine (Abstract)

Horng-Shyang Liao , National Center for High-performance Computing, Hsinchu, Taiwan
San-Liang Chu , National Center for High-performance Computing, Hsinchu, Taiwan
Bo-Yin Li , National Center for High-performance Computing, Hsinchu, Taiwan
Charlie H. Chang , National Center for High-performance Computing, Hsinchu, Taiwan
pp. 289-292
Session 14: Scheduling (1)

Queuing Network Modeling of a Cluster-Based Parallel System (Abstract)

Mohammad K. Akbari , Amirkabir University of Technology, Tehran, Iran
Siavash Khorsandi , Amirkabir University of Technology, Tehran, Iran
Bahman Javadi , Amirkabir University of Technology, Tehran, Iran
pp. 304-307
Session 15: Grid Application

A Method to Verify Originality of Sequences Secretly on Distributed Computing Environment (Abstract)

Hiroshi Nakamura , The University of Tokyo, Japan
Ken-ichi Kurata , The University of Tokyo, Japan
Vincent Breton , Corpusculaire de Clermont-Ferrand, France
pp. 310-319

Implementation of Protein Tertiary Structure Prediction System with NetSolve (Abstract)

Tomoyuki Hiroyasu , Doshisha University, Japan
Yusuke Tanimura , Doshisha University, Japan
Mitsunori Miki , Doshisha University, Japan
Keiko Aoi , Doshisha University, Japan
Yuko Okamoto , Okazaki National Research Institute, Japan
Jack Dongarra , University of Tennessee
pp. 320-327

The Integration and Application of the Computational Grid Structure in Flood Forecast System (Abstract)

Chen-Pey Huang , The National Center for High-Performance Computing, Hsinchu, Taiwan
Ho-Cheng Lien , The National Center for High-Performance Computing, Hsinchu, Taiwan
Jyh-Horng Wu , The National Center for High-Performance Computing, Hsinchu, Taiwan
Whey-Fone Tsai , The National Center for High-Performance Computing, Hsinchu, Taiwan
Yi-Haur Shiau , The National Center for High-Performance Computing, Hsinchu, Taiwan
pp. 328-331
Session 16: Scheduling (2)

A Compensation-based Scheduling Scheme for Grid Computing (Abstract)

J. P. Gozali , National University of Singapore
Y. M. Teo , National University of Singapore; Singapore-Massachusetts Institute of Technology Alliance
X. Wang , National University of Singapore; Singapore-Massachusetts Institute of Technology Alliance
pp. 334-342

The Impact of Local Priority Policies on Grid Scheduling Performance and an Adaptive Policy-based Grid Scheduling Algorithm (Abstract)

Siraprapa Wiriyaprasit , Chulalongkorn University, Bangkok, Thailand
Veera Muangsin , Chulalongkorn University, Bangkok, Thailand
pp. 343-346

A Novel Algorithm for Mapping Parallel Applications in Computational Grid Environments (Abstract)

Panu Phinjaroenphan , RMIT University, Melbourne, Victoria, Australia
Savitri Bevinakoppa , RMIT University, Melbourne, Victoria, Australia
pp. 347-350
WS4: BioGrid Workshop

Drug Discovery Using Grid Technology (Abstract)

Yuichiro Inagaki , Fuji Research Institute Corporation
Michiaki Hamada , Fuji Research Institute Corporation
Hiroshi Chuman , Tokushima University
pp. 352-356

A System Architecture Assisting User Trial-and-Error Process in in-silico Drug Design (Abstract)

Shinji Shimojo , Osaka University, Japan
Ichiro Hasegawa , NEC System Technologies, Ltd.
Yoshiyuki Kido , Mitsui Knowledge Industry Co., Ltd.
Takashi Maeno , Osaka University, Japan
Susumu Date , Osaka University, Japan
pp. 357-364

Development of a Database System for Drug Discovery by Employing Grid Technology (Abstract)

Yukako Tohsato , Osaka University, Japan
Takahiro Kosaka , Osaka University, Japan
Hideo Matsuda , Osaka University, Japan
Shinji Shimojo , Osaka University, Japan
Susumu Date , Osaka University, Japan
Reiji Teramoto , Sumitomo Pharmaceuticals Co., Ltd.
Kazuto Yamazaki , Sumitomo Pharmaceuticals Co., Ltd.
Masato Kitajima , Osaka University, Japan; Fujitsu Kyushu System Engineering Limited
pp. 365-369

GBTK: A Toolkit for Grid Implementation of BLAST (Abstract)

Rajendra R. Joshi , Centre for Development of Advanced Computing, Pune, India
M. Kumar Satish , Centre for Development of Advanced Computing, Pune, India
pp. 378-382

iGridPortal and Biological Problems (Abstract)

Tran Linh Thuoc , University of Natural Sciences
Vo Cam Quy , University of Natural Sciences
Do Anh Tuan , University of Natural Sciences
Hoang Le Minh , University of Natural Sciences
Nguyen Thi Thanh Nhan , University of Natural Sciences
Vo Duc Cam Hai , University of Natural Sciences
pp. 383-386
WS1: Workshop on Computational Fluid Dynamics and Computational Mechanics for the New Century

Computational Approach to Hemodynamics in Femoral Bypass Graft (Abstract)

Aike Qiao , Japan Advanced Institute of Science and Technology; Beijing University of Technology
Teruo Matsuzawa , Japan Advanced Institute of Science and Technology
pp. 411-417

An Application of the Parallel Processing Computer to a Nuclear Disaster Prevention Support System (Abstract)

Tomohiro Hara , Mitsubishi Heavy Industries, Ltd.
Shigehiro Nukatsuka , Mitsubishi Heavy Industries, Ltd.
Takeshi Adachi , Ryoken Tech. Co., Ltd.
Osami Watanabe , Mitsubishi Heavy Industries, Ltd.
pp. 419-426
WS3: Workshop on Reconfigurable Systems for HPC

Design Considerations of a Meta-Level Optimizing Computer System (PDF)

Fumihito Furukawa , Utsunomiya University, Japan
Moriyuki Saito , Utsunomiya University, Japan
Kanemitsu Ootsu , Utsunomiya University, Japan
Takashi Yokota , Utsunomiya University, Japan
Gaku Ishihara , Utsunomiya University, Japan
Takanobu Baba , Utsunomiya University, Japan
pp. 430-431

Reconfigurable Neural Network Using DAP/DNA (PDF)

Kazuaki Murakami , Kyushu University, Japan
Yunqing Yu , Kyushu University, Japan
pp. 432-433

Outline of the Ultra Fine Grained Parallel Processing by FPGA (Abstract)

Y. Inoguchi , PRESTO, Japan Advanced Institute of Science and Technology
pp. 434-441

SysteMorph: Dynamic/Online/Adaptive System-Level Optimization for SoC (Abstract)

Kazuhito Eshima , Kyushu University
Takanori Hayashida , Kyushu University
Yosuke Fujii , Kyushu University
Makoto Shuto , Institute of Systems & Information Technologies/KYUSHU
Takeshi Soga , Fukuoka Industry, Science & Technology Foundation
Yasuyuki Tanoue , Kyushu University
Makoto Yoshida , Fukuoka Industry, Science & Technology Foundation
Kazuaki Murakami , Kyushu University
Norifumi Yoshimatsu , Fukuoka Industry, Science & Technology Foundation
pp. 442-447

A Coarse-Grained Reconfigurable Architecture Supporting Flexible Execution (PDF)

Yoshito Goto , Hiroshima City University
Takashi Kawasaki , Hiroshima City University
Akira Kojima , Hiroshima City University
Tetsuo Hironaka , Hiroshima City University
Takeshi Fukuda , Hiroshima City University
Kazuya Tanigawa , Hiroshima City University
pp. 448-449
WS2: Myrinet Users Group: Special Interest of PC Cluster Advanced Technologies and Experiences

AIST Super Cluster: A Large Scale Heterogeneous Cluster with 14.6TFLOPS Peak Performance (PDF)

Tomohiro Kudoh , National Institute of Advanced Industrial Science and Technology (AIST)
pp. 453

Pink: A 1024-node Single-System Image Linux Cluster (Abstract)

Erik A. Hendriks , Cluster Research Lab, Los Alamos, NM
Ronald G. Minnich , Cluster Research Lab, Los Alamos, NM
Sung-Eun Choi , Cluster Research Lab, Los Alamos, NM
Gregory R. Watson , Cluster Research Lab, Los Alamos, NM
Matthew J. Sottile , Cluster Research Lab, Los Alamos, NM
pp. 454-461

Fast Mapping on Myrinet Networks (Abstract)

Erik A. Hendriks , Los Alamos National Laboratory
pp. 462-466

High-performance Neural Network Training on a Computational Cluster (Abstract)

N. Bourbakis , Wright State University
M. Yang , Wright State University
D. Goldman , Soft Sigth Inc.
J. Lu , Wright State University
pp. 467-472

Comparative Analysis of High-Performance Clusters' Communication Environments Using HPL Test (Abstract)

Oleg Samovarov , Institute for System Programming Russian Academy of Sciences, Moscow, Russia
Arutyun Avetisyan , Institute for System Programming Russian Academy of Sciences, Moscow, Russia
Sergey Gaissaryan , Institute for System Programming Russian Academy of Sciences, Moscow, Russia
Dmitry Grushin , Institute for System Programming Russian Academy of Sciences, Moscow, Russia
pp. 473-476
WS6: Simulation Results on the Earth Simulator

Model Development for the Global Warming Prediction by using the Earth Simulator (Abstract)

Hiroyasu Hasumi , University of Tokyo, Japan
Akimasa Sumi , University of Tokyo, Japan
Minoru Nozawa , University of Tokyo, Japan
Seita Emori , University of Tokyo, Japan
Masahide Kimoto , University of Tokyo, Japan
pp. 480-487

Development of Nonhydrostatic Coupled Ocean-Atmosphere Simulation Code on the Earth Simulator (Abstract)

Yosuke Abe , The Graduate University for Advances Studies, Hayama-cho, Japan
Takeshi Sugimura , The Graduate University for Advances Studies, Hayama-cho, Japan
Keisuke Hirai , The Graduate University for Advances Studies, Hayama-cho, Japan
Masayuki Yamada , NEC Informatec Systems, LTD., Sagamihara-shi, Japan
Kunihiko Watanabe , The Earth Simulator Center, Yokohama, Japan
Koji Goto , NEC Corporation, Fuchu, Tokyo, Japan
Xindong Peng , The Earth Simulator Center, Yokohama, Japan
Hiromitsu Fuchigami , NEC Informatec Systems, LTD., Sagamihara-shi, Japan
Keiko Takahashi , The Earth Simulator Center, Yokohama, Japan
Mitsuru Ohdaira , The Earth Simulator Center, Yokohama, Japan
Kenji Komine , The Earth Simulator Center, Yokohama, Japan
pp. 487-494

Simulations of Global Seismic Wave Propagation for 3-D Earth Model (Abstract)

Dimitri Komatitsch , Seismological Laboratory, California Institute of Technology
Seiji Tsuboi , Institute for Frontier Research on Earth Evolution, JAMSTEC
Chen Ji , Seismological Laboratory, California Institute of Technology
Jeroen Tromp , Seismological Laboratory, California Institute of Technology
pp. 496-501

Large Scale Simulations for Carbon Nanotubes (Abstract)

Kazuo Minami , Research Organization for Information Science & Technology
Noejung Park , Research Organization for Information Science & Technology
David Tomanek , Michigan State University
Mikio Iizuka , Research Organization for Information Science & Technology
Hisashi Nakamura , Research Organization for Information Science & Technology
Syogo Tejima , Research Organization for Information Science & Technology
Yoshiyuki Miyamoto , Nanotube Technology Center NEC Corporation, Japan
pp. 502-509

Numerical Simulations of the Internal Flow of Rocket Engines (Abstract)

Nobuhiro Yamanishi , Institute of Space Technology and Aeronautics
Chisachi Kato , The University of Tokyo, Japan
Taro Shimizu , Institute of Space Technology and Aeronautics
pp. 510-517

Author Index (PDF)

pp. 518-520
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