The Community for Technology Leaders
2014 47th Hawaii International Conference on System Sciences (1995)
Hawaii, USA
Jan. 4, 1995 to Jan. 7, 1995
ISSN: 1060-3425
ISBN: 0-8186-6921-7
TABLE OF CONTENTS
Project-Oriented Databases and Knowledge Bases in Genome Research

Visualization and database tools for YAC and cosmid contig construction (PDF)

A.J. Lee , Human Genome Center, Michigan Univ., Ann Arbor, MI, USA
S.W. Thomas , Human Genome Center, Michigan Univ., Ann Arbor, MI, USA
E.A. Rundensteiner , Human Genome Center, Michigan Univ., Ann Arbor, MI, USA
pp. 4

A database system for constructing, integrating, and displaying physical maps of chromosome 19 (PDF)

T. Slezak , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
D. Ow , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
L. Ashworth , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
D. Nelson , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
A. Carrano , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
M. Wagner , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
E. Branscomb , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
M. Yeh , Human Genome Center, Lawrence Livermore Nat. Lab., CA, USA
pp. 14

A model for comparing genomic restriction maps (PDF)

T. I. Dix , Dept. of Comput. Sci., Monash Univ., Clayton, Vic., Australia
D.M. Platt , Dept. of Comput. Sci., Monash Univ., Clayton, Vic., Australia
pp. 24

A graph-theoretic data model for genome mapping databases (PDF)

E.R. Bergeman , Dept. of Cell Biol., Baylor Coll. of Med., Houston, TX, USA
C.B. Lawrence , Dept. of Cell Biol., Baylor Coll. of Med., Houston, TX, USA
M. Graves , Dept. of Cell Biol., Baylor Coll. of Med., Houston, TX, USA
pp. 32

Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes (PDF)

N.A. Kolchanov , Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
O.V. Kel , Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.E. Kel , Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.N. Naumochkin , Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.G. Romachenko , Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
pp. 42

Implementation and testing of an automated EST processing and similarity analysis system (PDF)

J. Riedl , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
E. Chi , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
T. Newman , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
N. Dalton , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
E. Shoop , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
E. Retzel , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
P. Bieganski , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
J. Carlis , Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
pp. 52

A database for globin gene expression data (PDF)

W. Miller , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
S. Schwartz , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
J. Peck , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
A. Elsherbini , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
N. Stojanovic , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
R. Hardison , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
C. Riemer , Dept. of Comput. Sci. & Eng., Pennsylvania State Univ., University Park, PA, USA
pp. 62

YAMATO and ASUKA: DNA database management system (PDF)

H. Kitakami , Hiroshima City Univ., Japan
Y. Tateno , Hiroshima City Univ., Japan
Y. Ugawa , Hiroshima City Univ., Japan
N. Saitou , Hiroshima City Univ., Japan
K. Ikeo , Hiroshima City Univ., Japan
T. Gojobori , Hiroshima City Univ., Japan
T. Shin-I , Hiroshima City Univ., Japan
pp. 72

Comparative study of relational and object-oriented modelings of genomic data (PDF)

Dong-Guk Shin , Dept. of Comput. Sci. & Eng., Connecticut Univ., Storrs, CT, USA
pp. 81

Knowledge discovery in a genetic database: the MINOS system (PDF)

J. Sallantin , Univ. des Sci. et Tech. du Languedoc, Montpellier, France
H. Ripoche , Univ. des Sci. et Tech. du Languedoc, Montpellier, France
pp. 91
Computational Biology and Parallel Computing

Genetic epidemiology, parallel algorithms, and workstation networks (PDF)

G.D. Peterson , Comput. & Commun. Res. Center, Washington Univ., St. Louis, MO, USA
R.D. Chamberlain , Comput. & Commun. Res. Center, Washington Univ., St. Louis, MO, USA
M.A. Province , Comput. & Commun. Res. Center, Washington Univ., St. Louis, MO, USA
M.A. Franklin , Comput. & Commun. Res. Center, Washington Univ., St. Louis, MO, USA
pp. 101

The application of a massively parallel computer to the simulation of electrical wave propagation phenomena in the heart muscle using simplified models (PDF)

M.G. Karpoukhin , Dept. of Comput. Sci., California Univ., Los Angeles, CA, USA
B.Y. Kogan , Dept. of Comput. Sci., California Univ., Los Angeles, CA, USA
W.J. Karplus , Dept. of Comput. Sci., California Univ., Los Angeles, CA, USA
pp. 112

A parallel algorithm for calculating the potential energy in DNA (PDF)

K. Shanmugam , Dept. of Comput. & Inf. Sci., Oregon Univ., Eugene, OR, USA
W.L. Peticolas , Dept. of Comput. & Inf. Sci., Oregon Univ., Eugene, OR, USA
J. Dominguez , Dept. of Comput. & Inf. Sci., Oregon Univ., Eugene, OR, USA
T. Rush, III , Dept. of Comput. & Inf. Sci., Oregon Univ., Eugene, OR, USA
J.S. Conery , Dept. of Comput. & Inf. Sci., Oregon Univ., Eugene, OR, USA
pp. 123

Benchmarking UHGROMOS (PDF)

J.A. Lupo , Wright Res. & Dev. Center, Wright-Patterson AFB, OH, USA
pp. 132

The scaling of molecular dynamics on the KSR1 (PDF)

R. Haacke , Dept. of Chem. & Comput. Sci., Houston Univ., TX, USA
B. Montgomery Pettitt , Dept. of Chem. & Comput. Sci., Houston Univ., TX, USA
pp. 142
Stochastic Models and Grammars for Bioinformatics

Stochastic assembly of contig restriction maps (PDF)

T.I. Dix , Dept. of Comput. Sci., Monash Univ., Clayton, Vic., Australia
D.M. Platt , Dept. of Comput. Sci., Monash Univ., Clayton, Vic., Australia
pp. 155

Molecular evolutionary phylogenetic trees based on minimum description length principle (PDF)

H. Tanaka , Nat. Inst. of Gentics, Tokyo Med. & Dental Univ., Japan
T. Gojobori , Nat. Inst. of Gentics, Tokyo Med. & Dental Univ., Japan
N. Fukuda , Nat. Inst. of Gentics, Tokyo Med. & Dental Univ., Japan
F. Ren , Nat. Inst. of Gentics, Tokyo Med. & Dental Univ., Japan
pp. 165

A combination of a functional motif model and a structural motif model for a database validation (PDF)

Y. Fujiwara , Massively Parallel Syst., NEC Lab., Kanagawa, Japan
M. Asogawa , Massively Parallel Syst., NEC Lab., Kanagawa, Japan
A. Konagaya , Massively Parallel Syst., NEC Lab., Kanagawa, Japan
pp. 174

Parameterization studies of hidden Markov models representing highly divergent protein sequences (PDF)

R. Raman , Dept. of Biol. Sci., Nevada Univ., Las Vegas, NV, USA
M.A. McClure , Dept. of Biol. Sci., Nevada Univ., Las Vegas, NV, USA
pp. 184

New hashing techniques and their application to a protein structure database system (PDF)

T. Akutsu , Dept. of Comput. Sci., Gunma Univ., Japan
M. Ishikawa , Dept. of Comput. Sci., Gunma Univ., Japan
K. Onizuka , Dept. of Comput. Sci., Gunma Univ., Japan
pp. 197

Design and use of a software framework to obtain information derived from macromolecular structure data (PDF)

W. Chang , Dept. of Biochem. & Molecular Biophys., Columbia Univ., New York, NY, USA
P.E. Bourne , Dept. of Biochem. & Molecular Biophys., Columbia Univ., New York, NY, USA
I.N. Shindyalov , Dept. of Biochem. & Molecular Biophys., Columbia Univ., New York, NY, USA
J.A. Cooper , Dept. of Biochem. & Molecular Biophys., Columbia Univ., New York, NY, USA
pp. 207

Knowledge representation tools for molecular scene analysis (PDF)

D. Conklin , Dept. of Comput. & Inf. Sci., Queen's Univ., Kingston, Ont., Canada
S. Fortier , Dept. of Comput. & Inf. Sci., Queen's Univ., Kingston, Ont., Canada
J. Glasgow , Dept. of Comput. & Inf. Sci., Queen's Univ., Kingston, Ont., Canada
pp. 217

Dataflow processing in a global networked context: a solution for the computational methods pool management problem (PDF)

Y. Takahashi , Dept. of Knowledge-Based Inf. Eng., Toyohashi Univ. of Technol., Japan
W.-D. Ihlenfeldt , Dept. of Knowledge-Based Inf. Eng., Toyohashi Univ. of Technol., Japan
H. Abe , Dept. of Knowledge-Based Inf. Eng., Toyohashi Univ. of Technol., Japan
pp. 227

Computer-aided design of crystalline drugs (PDF)

V. Agafonov , Karpov Inst. of Phys. Chem., Moscow, Russia
A.V. Dzyabchenko , Karpov Inst. of Phys. Chem., Moscow, Russia
pp. 237

Intervals and the deduction of drug binding site models (PDF)

G.M. Crippen , Coll. of Pharmacy, Michigan Univ., Ann Arbor, MI, USA
pp. 246

Measuring proteins and voids in proteins (PDF)

H. Edelsbrunner , Illinois Univ., Urbana, IL, USA
Jie Liang , Illinois Univ., Urbana, IL, USA
Ping Fu , Illinois Univ., Urbana, IL, USA
M. Facello , Illinois Univ., Urbana, IL, USA
pp. 256

Mapping volumetric properties on molecular surfaces in real-time (PDF)

M. Teschner , Silicon Graphics Inc., Riehen, Switzerland
C. Henn , Silicon Graphics Inc., Riehen, Switzerland
pp. 265

New man-machine communication strategies in molecular modelling (PDF)

H. Vollhardt , Inst. fur Phys. Chem., Tech. Hochschule Darmstadt, Germany
C.-D. Zachmann , Inst. fur Phys. Chem., Tech. Hochschule Darmstadt, Germany
W. Heiden , Inst. fur Phys. Chem., Tech. Hochschule Darmstadt, Germany
J. Brickman , Inst. fur Phys. Chem., Tech. Hochschule Darmstadt, Germany
pp. 273
Protein Structure Prediction

Use of multiple alignments in protein secondary structure prediction (PDF)

P.J. Munson , Analytical Biostatistics Section, Nat. Inst. of Health, Bethesda, MD, USA
V.D. Francesco , Analytical Biostatistics Section, Nat. Inst. of Health, Bethesda, MD, USA
J. Garnier , Analytical Biostatistics Section, Nat. Inst. of Health, Bethesda, MD, USA
pp. 285

Protein fold recognition from secondary structure assignments (PDF)

R.B. Russell , Lab. of Molecular Biophys., Oxford, UK
R.R. Copley , Lab. of Molecular Biophys., Oxford, UK
G.J. Barton , Lab. of Molecular Biophys., Oxford, UK
pp. 302

The pattern of common supersecondary structure (motifs) in protein database (PDF)

Zhirong Sun , Dept. of Biol. Sci. & Biotechnol., Tsinghua Univ., Beijing, China
T. Blundell , Dept. of Biol. Sci. & Biotechnol., Tsinghua Univ., Beijing, China
pp. 312

Protein folding potential functions (PDF)

G.M. Crippen , Coll. of Pharmacy, Michigan Univ., Ann Arbor, MI, USA
pp. 319

Practical use of a fully automatic homology-based protein modelling protocol (PDF)

E. Platt , Proteus Molecular Design Ltd., Macclesfield, UK
B. Robson , Proteus Molecular Design Ltd., Macclesfield, UK
pp. 325

Author Index (PDF)

pp. 355
96 ms
(Ver 3.1 (10032016))