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Proceedings of the Twenty-Seventh Annual Hawaii International Conference on System Sciences (1994)
Wailea, HI, USA
Jan. 4, 1994 to Jan. 7, 1994
ISBN: 0-8186-5090-7
TABLE OF CONTENTS

Evolution and neural networks/spl minus/protein secondary structure prediction above 71% accuracy (PDF)

Rost , EMBL, Heidelberg, Germany
Sander , EMBL, Heidelberg, Germany
Schneider , EMBL, Heidelberg, Germany
pp. 385-394

Protein secondary structure prediction using periodic-quadratic-logistic models: statistical and theoretical issues (PDF)

Munson , Div. of Comput. Res. & Technol., Nat. Inst. of Health, Bethesda, MD, USA
Di Francesco , Div. of Comput. Res. & Technol., Nat. Inst. of Health, Bethesda, MD, USA
Porrelli , Div. of Comput. Res. & Technol., Nat. Inst. of Health, Bethesda, MD, USA
pp. 375-384

An m-of-n rule induction algorithm and its application to DNA domain (PDF)

Ting Kai Ming , Dept. of Comput. Sci., Sydney Univ., NSW, Australia
pp. 133-140

Learning local languages and its application to protein /spl alpha/-chain identification (PDF)

Yokomori , Dept. of Comput Sci. & Inf. Math., Univ. of Electro-Commun., Chofu, Japan
Ishida , Dept. of Comput Sci. & Inf. Math., Univ. of Electro-Commun., Chofu, Japan
Kobayashi , Dept. of Comput Sci. & Inf. Math., Univ. of Electro-Commun., Chofu, Japan
pp. 113-122

Protein structure prediction based on multi-level description (PDF)

Onizuka , Inst. for New Generation Comput. Technol., Tokyo, Japan
Tsuda , Inst. for New Generation Comput. Technol., Tokyo, Japan
Ishikawa , Inst. for New Generation Comput. Technol., Tokyo, Japan
Aiba , Inst. for New Generation Comput. Technol., Tokyo, Japan
pp. 355-364

Parameterizing genetic algorithms for protein folding simulation (PDF)

Schulze-Kremer , Brainware GmbH, Berlin, Germany
Tiedemann , Brainware GmbH, Berlin, Germany
pp. 345-354

Use of /spl beta/-strand interaction pseudo-potentials in protein structure prediction and modelling (PDF)

Hubbard , Centre for Protein Eng., Med. Res. Council, Cambridge, UK
pp. 336-344

Properties of intraglobular contacts in proteins: an approach to prediction of tertiary structure (PDF)

Galaktionov , Center for Molecular Design, Washington Univ., St. Louis, MO, USA
Marshall , Center for Molecular Design, Washington Univ., St. Louis, MO, USA
pp. 326-335

Recursive approaches to the statistical physics of lattice proteins (PDF)

Stolorz , Jet Propulsion Lab., California Inst. of Technol., Pasadena, CA, USA
pp. 316-325

A Bayesian approach to sequence alignment algorithms for protein structure recognition (PDF)

Goldstein , Sch. of Chem. Sci., Illinois Univ., Urbana, IL, USA
Luthey-Schulten , Sch. of Chem. Sci., Illinois Univ., Urbana, IL, USA
Wolynes , Sch. of Chem. Sci., Illinois Univ., Urbana, IL, USA
pp. 306-315

The comparison of structures and sequences: alignment, searching and the detection of common folds (PDF)

Johnson , Dept. of Crystallogr., Imperial Cancer Res. Fund Labs., London, UK
Overington , Dept. of Crystallogr., Imperial Cancer Res. Fund Labs., London, UK
Edwards , Dept. of Crystallogr., Imperial Cancer Res. Fund Labs., London, UK
May , Dept. of Crystallogr., Imperial Cancer Res. Fund Labs., London, UK
Rodionov , Dept. of Crystallogr., Imperial Cancer Res. Fund Labs., London, UK
pp. 296-305

Stochastic context-free grammars for modeling RNA (PDF)

Sakakibara , Dept. of Comput. & Inf. Sci., California Univ., Santa Cruz, CA, USA
Brown , Dept. of Comput. & Inf. Sci., California Univ., Santa Cruz, CA, USA
Underwood , Dept. of Comput. & Inf. Sci., California Univ., Santa Cruz, CA, USA
pp. 284-293

Application of hidden Markov modeling to the characterization of transcription factor binding sites (PDF)

Raman , Sch. of Med., Pennsylvania Univ., Philadelphia, PA, USA
Overton , Sch. of Med., Pennsylvania Univ., Philadelphia, PA, USA
pp. 275-283

A protein family classification method for analysis of large DNA sequences (PDF)

Henikoff , Fred Hutchinson Cancer Res. Center, Howard Hughes Med. Inst., Seattle, WA, USA
Henikoff , Fred Hutchinson Cancer Res. Center, Howard Hughes Med. Inst., Seattle, WA, USA
pp. 265-274

Protein motifs: towards a unified view on databases (PDF)

Hatsagi , Dept. of Comput. Sci., Chicago Univ., IL, USA
pp. 255-264

Identifying repeated structural elements in folded proteins (PDF)

Miller , Dept. of Biochem. & Biophys., Washington State Univ., Pullman, WA, USA
Douthart , Dept. of Biochem. & Biophys., Washington State Univ., Pullman, WA, USA
pp. 235-244

De novo design of ligands /spl lsqb/automated drug design/spl rsqb/ (PDF)

Ho , Center for Molecular Design, Washington Univ., St. Louis, MO, USA
Marshall , Center for Molecular Design, Washington Univ., St. Louis, MO, USA
pp. 213-222

Inclusion of molecular flexibility in partition coefficient calculations on oligopeptides using stochastic sampling (PDF)

Richards , Dept. of Chem., Florida Univ., Gainesville, FL, USA
Williams , Dept. of Chem., Florida Univ., Gainesville, FL, USA
Iyengar , Dept. of Chem., Florida Univ., Gainesville, FL, USA
pp. 203-212

A comprehensive approach to database management of quantitative structure-activity relationships (QSAR) in chemistry and biology (PDF)

Hoekman , Dept. of Chem., Pomona Coll., Claremont, CA, USA
Leo , Dept. of Chem., Pomona Coll., Claremont, CA, USA
Peng Li , Dept. of Chem., Pomona Coll., Claremont, CA, USA
Litai Zhang , Dept. of Chem., Pomona Coll., Claremont, CA, USA
Hansch , Dept. of Chem., Pomona Coll., Claremont, CA, USA
pp. 193-202

Parallel constrained minimization for interactive protein modeling (PDF)

Surles , Supercomput. Center, Gen. Atomics, San Diego, CA, USA
pp. 183-192

A three-dimensional animation system for protein folding simulation (PDF)

Akahoshi , Inst. for New Generation Comput. Technol., Tokyo, Japan
Onizuka , Inst. for New Generation Comput. Technol., Tokyo, Japan
Ishikawa , Inst. for New Generation Comput. Technol., Tokyo, Japan
pp. 173-182

RAPID-2, an object-oriented associative memory applicable to genome data processing (PDF)

Archambaud , MASI Lab., Paris, France
Faudemay , MASI Lab., Paris, France
Greiner , MASI Lab., Paris, France
pp. 150-159

Design and implementation of a DNA Sequence Processor (PDF)

Dimidis , Database Syst. Res. & Dev. Center, Florida Univ., Gainesville, FL, USA
Kamel , Database Syst. Res. & Dev. Center, Florida Univ., Gainesville, FL, USA
pp. 98-107

Building integrated systems for data representation and analysis in molecular biology (PDF)

Perriere , Lab. de Biometrie, Univ. Claude Bernard, Villeurbanne, France
Chevenet , Lab. de Biometrie, Univ. Claude Bernard, Villeurbanne, France
Dorkeld , Lab. de Biometrie, Univ. Claude Bernard, Villeurbanne, France
Vermat , Lab. de Biometrie, Univ. Claude Bernard, Villeurbanne, France
Gautier , Lab. de Biometrie, Univ. Claude Bernard, Villeurbanne, France
pp. 89-97

A national scientific computing environment for the biological sciences (PDF)

Springer , Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA
pp. 87-88

Achieving interoperability between heterogeneous object-oriented genomic databases (PDF)

Dong-Guk Shin , Dept. of Comput. Sci. & Eng., Connecticut Univ., Storrs, CT, USA
pp. 77-86

Development of an integrated database for genome mapping and nucleotide sequences (PDF)

Suzuki , Inst. of Med. Sci., Tokyo Univ., Japan
Takagi , Inst. of Med. Sci., Tokyo Univ., Japan
pp. 68-76

ChromoScope: a graphic interactive browser for E. coli data expressed in the NCBI data model (PDF)

Jinghui Zhang , Nat. Center for Biotechnol. Inf., Nat. Libr. of Med., Bethesda, MD, USA
Ostell , Nat. Center for Biotechnol. Inf., Nat. Libr. of Med., Bethesda, MD, USA
Rudd , Nat. Center for Biotechnol. Inf., Nat. Libr. of Med., Bethesda, MD, USA
pp. 58-67

Database integration and visualization of maps of the human genome using the GnomeView interface (PDF)

Douthart , Pacific Northwest Lab., Richland, WA, USA
Pelkey , Pacific Northwest Lab., Richland, WA, USA
Thomas , Pacific Northwest Lab., Richland, WA, USA
pp. 49-57

Automating and streamlining inference of function of plant ESTs within a data analysis system (PDF)

Shoop , Dept. of Comput. Sci., Minnesota Univ., Minneapolis, MN, USA
Carlis , Dept. of Comput. Sci., Minnesota Univ., Minneapolis, MN, USA
pp. 47-48

A data structure for approximate string searching (PDF)

Roos , Dept. of Comput. Sci., Federal Inst. of Technol., Zurich, Switzerland
Fei Shi , Dept. of Comput. Sci., Federal Inst. of Technol., Zurich, Switzerland
Widmayer , Dept. of Comput. Sci., Federal Inst. of Technol., Zurich, Switzerland
pp. 45-46

Generalized suffix trees for biological sequence data: applications and implementation (PDF)

Bieganski , Dept. of Comput. Sci., Minnesota Univ., Minneapolis, MN, USA
Riedl , Dept. of Comput. Sci., Minnesota Univ., Minneapolis, MN, USA
Cartis , Dept. of Comput. Sci., Minnesota Univ., Minneapolis, MN, USA
pp. 35-44

An interactive system for database in immunogenetics (PDF)

Dehais , CNRS, Univ. des Sci. et Tech. du Languedoc, Montpellier, France
pp. 25-34

Overview of the structures of heterogeneous genome databases (PDF)

In Kuan Cheang , Dept. of Comput. Sci. & Telecommun., Missouri Univ., Kansas City, MO, USA
Young Bae Choi , Dept. of Comput. Sci. & Telecommun., Missouri Univ., Kansas City, MO, USA
Tang , Dept. of Comput. Sci. & Telecommun., Missouri Univ., Kansas City, MO, USA
pp. 15-24

Issues in the development of complex scientific databases (PDF)

Letovsky , Letovsky Assoc., New Haven, CT, USA
pp. 5-14
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