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2012 23rd International Workshop on Database and Expert Systems Applications (2006)
Krakow, Poland
Sept. 4, 2006 to Sept. 8, 2006
ISSN: 1529-4188
ISBN: 0-7695-2641-1
pp: 228-234
Saiful Akbar , Johannes Kepler University of Linz, Austria
Roland Wagner , Johannes Kepler University of Linz, Austria
Josef K? , Johannes Kepler University of Linz, Austria
ABSTRACT
This paper discusses about several combinations of protein similarity measurement-methods, with respect to normalization, spatial partitions, geometrical properties, and distance metrics. We compare the effectiveness of possible combinations to each other. Our experiment shows that the feature based on fractional occupancy outperforms other methods. In addition, merging individual features might also yield good result. A prototype of 3D protein geometrical-similarity retrieval system is built for implementing our approach.
INDEX TERMS
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CITATION
Saiful Akbar, Roland Wagner, Josef K?, "Exploiting Geometrical Properties on Protein Similarity Search", 2012 23rd International Workshop on Database and Expert Systems Applications, vol. 00, no. , pp. 228-234, 2006, doi:10.1109/DEXA.2006.56
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