2012 International Conference on Cloud and Service Computing (2013)
Beijing, China China
Nov. 4, 2013 to Nov. 6, 2013
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/CSC.2013.36
Sequence alignment is of great importance in bioinformatics research and one of the areas that present a significant computational challenge because of the amount and complexity of big data to be processed. Most of published implementations in bioinformatics are still focused on the analysis and/or assembly of biological sequences. Moreover, there lacks practical performance comparison on MPI based BLAST (Basic Local Alignment Search Tool) acceleration methods. This paper introduces an empirical study on accelerating BLAST using the MPI, and comparing the speedup performance between pblast based on MPI. Results show our method achieve a good speedup.
Li Ruan, Quan Zhou, Yilei Wu, Donghui Sui, Limin Xiao, "An Empirical Study on BLAST Parallel Acceleration", 2012 International Conference on Cloud and Service Computing, vol. 00, no. , pp. 162-163, 2013, doi:10.1109/CSC.2013.36