Abstracts of the BioSPICE Workshop (PDF)

Abstracts of the Controlling Complexity Workshop (PDF)

BioImage Data Mining and Informatics (PDF)

Preface (PDF)

Committees (PDF)

Challenges in Creating an Infrastructure for Physics-Based Simulation of Biological Structures (PDF)

Ontologies for Biologists — A Community Model for the Annotation of Genomic Data (PDF)

The National Alliance for Medical Imaging Computing (NA-MIC) (PDF)

The Center for Computational Biology (PDF)

Identifying Simple Discriminatory Gene Vectors with an Information Theory Approach (Abstract)

Learning Yeast Gene Functions from Heterogeneous Sources of Data Using Hybrid Weighted Bayesian Networks (Abstract)

Consensus Genetic Maps: A Graph Theoretic Approach (Abstract)

Gene Teams with Relaxed Proximity Constraint (Abstract)

Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons (Abstract)

Islands of Tractability for Parsimony Haplotyping (Abstract)

Accurate Prediction of Orthologous Gene Groups in Microbes (Abstract)

Motif Extraction and Protein Classification (Abstract)

Discriminative Discovery of Transcription Factor Binding Sites from Location Data (Abstract)

Reconstructing Phylogenetic Networks Using Maximum Parsimony (Abstract)

An Efficient Algorithm for Perfect Phylogeny Haplotyping (Abstract)

TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree (Abstract)

Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data (Abstract)

Analysis of SNP-Expression Association Matrices (Abstract)

A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays (Abstract)

Identification of Post-Translational Modifications via Blind Search of Mass-Spectra (Abstract)

Discover True Association Rates in Multi-protein Complex Proteomics Data Sets (Abstract)

Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra (Abstract)

An Efficient and Accurate Algorithm for Assigning Nuclear Overhauser Effect Restraints Using a Rotamer Library Ensemble and Residual Dipolar Couplings (Abstract)

Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins (Abstract)

Deformable Modeling for Improved Calculation of Molecular Velocities from Single-Particle Tracking (Abstract)

PSIST: Indexing Protein Structures Using Suffix Trees (Abstract)

Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes (Abstract)

An Algebraic Geometry Approach to Protein Structure Determination from NMR Data (Abstract)

A Tree-Decomposition Approach to Protein Structure Prediction (Abstract)

A Pivoting Algorithm for Metabolic Networks in the Presence of Thermodynamic Constraints (Abstract)

A Topological Measurement for Weighted Protein Interaction Network (Abstract)

Application of a Generalized MWC Model for the Mathematical Simulation of Metabolic Pathways Regulated by Allosteric Enzymes (Abstract)

Estimating Time-Dependent Gene Networks from Time Series Microarray Data by Dynamic Linear Models with Markov Switching (Abstract)

Choosing SNPs Using Feature Selection (Abstract)

Robust and Accurate Cancer Classification with Gene Expression Profiling (Abstract)

A Robust Meta-classification Strategy for Cancer Diagnosis from Gene Expression Data (Abstract)

Clustering Genes Using Gene Expression and Text Literature Data (Abstract)

Bioinformatic Insights from Metagenomics through Visualization (Abstract)

On Optimizing Distance-Based Similarity Search for Biological Databases (Abstract)

Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases (Abstract)

Investigation into Biomedical Literature Classification Using Support Vector Machines (Abstract)

Automated Validation of Polymerase Chain Reactions Using Amplicon Melting Curves (Abstract)

Author Index (PDF)