The Community for Technology Leaders
2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (2011)
Atlanta, Georgia USA
Nov. 12, 2011 to Nov. 15, 2011
ISBN: 978-1-4577-1612-6
TABLE OF CONTENTS
Papers

Table of content (PDF)

pp. i-xix

Title page (PDF)

pp. 1

A pilot study of a predicate-based vector space model for a biomedical search engine (Abstract)

Jesse D. Martinez , Cell Biology and Anatomy, Radiation, Oncology University of Arizona Cancer Center, Tucson, AZ, U.S.A
Myungjae Kwak , School of Information Technology, Macon State College, Macon, GA, U.S.A
Gondy Leroy , School of Information Systems and Technology, Claremont Graduate University, Claremont, CA, U.S.A
pp. 1001-1003

A genetic algorithms approach to the inference of cis-regulatory modules (Abstract)

Clare Bates Congdon , Department of Computer Science, University of Southern Maine, Portland, Maine, USA 04104
David J. Gagne , Department of Computer Science, University of Southern Maine, Portland, Maine, USA 04104
pp. 1004

Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest (Abstract)

Clare Bates Congdon , Department of Computer Science, University of Southern Maine, Portland, Maine, USA 04104
Jeffrey A. Thompson , Department of Computer Science, University of Southern Maine, Portland, Maine, USA 04104
pp. 1005

Development of three dimensional binary patterns for local bone structure analysis (Abstract)

Ashwini Kumar Mishra , Department of Electronics and Electrical Engineering, IIT Guwahati, Guwahati, India
Desok Kim , Department of Electrical Engineering, KAIST, Daejeon, South Korea
Ilma Andayana , Department of Electrical Engineering, KAIST, Daejeon, South Korea
pp. 1006-1008

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer (Abstract)

Sandra L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
James Karnia , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Gustavo Caetano-Anolles , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Kristin R. Delfino , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Maria B. Villamil , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 1009-1011

The analysis of DNA shuffling by nMDS (Abstract)

Y-h. Taguchi , Department of Physics, Chuo University, Tokyo, Japan
Ryota Doi , Department of Physics, Chuo University, Tokyo, Japan
pp. 1012-1013

Early detection of Alzheimer's based on intrinsic measurements (Abstract)

Xiuwen Liu , Department of Computer Science, Florida State University, Tallahassee, USA
Washington Mio , Department of Mathematics, Florida State University, Tallahassee, USA
Prabesh Kanel , Department of Computer Science, Florida State University, Tallahassee, USA
pp. 1014-1016

Reconstruction of gene regulatory networks by stepwise multiple linear regression from time-series microarray data (Abstract)

Yiqian Zhou , Center for Integrated Bioinformatics, School of Biomedical Engineering, Science and Health Systems, Drexel University, 3120 Market Street, Philadelphia, PA 19104, USA
Ahmet Sacan , Center for Integrated Bioinformatics, School of Biomedical Engineering, Science and Health Systems, Drexel University, 3120 Market Street, Philadelphia, PA 19104, USA
Jacqueline Gerhart , Center for Integrated Bioinformatics, School of Biomedical Engineering, Science and Health Systems, Drexel University, 3120 Market Street, Philadelphia, PA 19104, USA
pp. 1017-1019

E. coli and Agrobacterium non-coding regulatory RNA discovery (Abstract)

Hyejin Cho , Department of Genetic, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA
Hui-Hsien Chou , Department of Genetic, Development and Cell Biology, Department of Computer Science, Iowa State University, Ames, IA 50011, USA
pp. 1020-1022

The functional make up of proteomes is remarkably conserved (Abstract)

A. Naeem , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
G. Caetano-Anolles , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
A. Nasir , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
H. D. Lopez-Nicora , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
M. J. Khan , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 1023-1025

Infrastructure for sharing standardized clinical brain scans across hospitals (Abstract)

Steven G. Potkin , Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA
Meng Law , Department of Neuroradiology, USC Keck School of Medicine, Los Angeles, CA, USA
Carl Kesselman , Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA
Anton Hasso , Department of Radiology, University of California, Irvine, Orange CA, USA
Janet Sobell , Southern California Clinical and Translational Science Institute (SC CSTI), University of Southern California, Los Angeles CA, USA
Theo G. M. van Erp , Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA
Ann L. Chervenak , Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA
Fabio Macciardi , Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA
Joseph Ames , Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA
Jim Murry , UCI Health Affairs Information Services, University of California, Irvine, Orange, CA, USA
Lisa Dahm , UCI Institute for Clinical & Translational Sciences, University of California, Irvine, Irvine, CA, USA
David Keator , Department of Psychiatry and Human Behavior, University of California, Irvine, Irvine, CA, USA
Mike D'Arcy , Information Sciences Institute, University of Southern California, Marina del Rey, CA, USA
pp. 1026-1028

Evolution of protein architectures inferred from phylogenomic analysis of CATH (Abstract)

S.A. Bukhari , Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL 61801 USA
G. Caetano-Anolles , Evolutionary Bioinformatics Laboratory, Department of Crop Sciences, University of Illinois, Urbana, IL 61801 USA
pp. 1029-1031

Host-specific HCV evolution and response to the combined interferon and ribavirin therapy (Abstract)

Joseph C. Forbi , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
William M. Lee , Divisions of Digestive and Liver Disease and Infectious Diseases, UT Southwestern Medical Center at Dallas, Dallas, TX and
Guo-liang Xia , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
Maureen J. Donlin , Department of Molecular Microbiology and Immunology
Yury E. Khudyakov , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
John E. Tavis , Department of Molecular Microbiology and Immunology
Gilberto Vaughan , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
He-Jun Yuan , Divisions of Digestive and Liver Disease and Infectious Diseases, UT Southwestern Medical Center at Dallas, Dallas, TX and
James Lara , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
Brian L. Pearlman , Center for Hepatitis C, Atlanta Medical, Center, Atlanta, GA
pp. 102-109

Literature based Bayesian analysis of gene expression data (Abstract)

E. Olusegun George , Dept. of Mathematical Sciences, University of Memphis
Ramin Homayouni , Bioinformatics Program, Dept. of Biological Sciences, University of Memphis, Memphis, USA
Lijing Xu , Bioinformatics Program, University of Memphis, Memphis, USA
pp. 1032

Weighted pooling high-throughput gene expression data sets to maximize the functional coherence of the top rank genes (Abstract)

E. Olusegun George , Dept. Of Mathematical Sciences, University of Memphis, Memphis, USA
Xiaodong Zhou , Dept. of Anatomy and Neurobiology, University of Tennessee Health Science Center, Dept. of Computer Science, University of Memphis, Memphis, USA
pp. 1033

Quality assessment of LC-MS metabolomic data (Abstract)

Mohammad R. Nezami Ranjbar , Department of Electrical and Computer Engineering, Virginia Tech, Arlington, VA, USA
Yue Wang , Department of Electrical and Computer Engineering, Virginia Tech, Arlington, VA, USA
Habtom W. Ressom , Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC, USA
pp. 1034-1036

Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies (Abstract)

Habtom W. Ressom , Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC, USA
Jinlian Wang , Lombardi Comprehensive Cancer Center, Georgetown University, Washington DC, USA
pp. 1037-1038

Identifying smoking associated gene co-expression networks related to oral cancer initiation (Abstract)

Jie Zhang , OSUCCC Biomedical Informatics Shared Resource, Columbus, OH
Thomas Knobloch , Department of Environmental Sciences, Columbus, OH
Kun Huang , OSUCCC Biomedical Informatics Shared Resource, Columbus, OH
Christopher Weghorst , Department of Environmental Sciences, Columbus, OH
Jeffrey Parvin , OSUCCC Biomedical Informatics Shared Resource, Columbus, OH
pp. 1039-1041

Predicting Parkinson's disease related genes using frequent gene co-expression analysis (Abstract)

Kun Huang , OSUCCC Biomedical Informatics Shared Resource, Fuzhou University, Fuzhou, China
Shiwei Ni , Life Science Research Institute, Fuzhou University, Fuzhou, China
Jie Zhang , OSUCCC Biomedical Informatics Shared Resource, Fuzhou University, Fuzhou, China
Jeffrey Parvin , OSUCCC Biomedical Informatics Shared Resource, Fuzhou University, Fuzhou, China
Yufeng Yang , Life Science Research Institute, Fuzhou University, Fuzhou, China
pp. 1042-1044

Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy (Abstract)

Yufei Huang , Department of ECE, University of Texas at San Antonio, San Antonio, Texas, USA
Yidong Chen , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
Chifeng Ma , Department of ECE, University of Texas at San Antonio, San Antonio, Texas, USA
Huang-I Harry , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, Texas, USA
pp. 1045-1047

iQuant: A fast yet accurate GUI tool for transcript quantification (Abstract)

Tin Chi Nguyen , Department of Computer Science, Wayne State University, Detroit, MI 48202
Guorong Xu , Department of Computer Science, University of New Orleans, New Orleans, LA 70148
Nan Deng , Department of Computer Science, Wayne State University, Detroit, MI 48202
Zhansheng Duan , Department of Computer Science, University of New Orleans, New Orleans, LA 70148
Dongxiao Zhu , Department of Computer Science, Wayne State University, Detroit, MI 48202
pp. 1048-1050

SPATA: A highly accurate GUI tool for de novo transcriptome assembly (Abstract)

Tin Chi Nguyen , Department of Computer Science, Wayne State University, Detroit, MI 48202, USA
Dongxiao Zhu , Department of Computer Science, Wayne State University, Detroit, MI 48202, USA
Zhiyu Zhao , The LONI Institute, Baton Rouge, LA, USA
pp. 1051-1053

Reconstruction of gene regulatory networks using state space model (Abstract)

Xi Wu , School of Computing, The University of Southern Mississippi, Hattiesburg, MS
Chaoyang Zhang , School of Computing, The University of Southern Mississippi, Hattiesburg, MS
Ping Gong , Environmental Services, SpecPro Inc, San Antonio, TX
Nan Wang , School of Computing, The University of Southern Mississippi, Hattiesburg, MS
pp. 1054-1056

A parallel programming framework with Markovian messaging for LC-MS peptide detection (Abstract)

Youting Sun , Dept. of Electrical and Computer Engineering, Texas A&M Univ., College Station, USA
Ulisses Braga-Neto , Dept. of Electrical and Computer Engineering, Texas A&M Univ., College Station, USA
Jianqiu Zhang , Dept. of Electrical and Computer Engieering, Univ. of Texas at San Antonio, San Antonio, USA
Edward Dougherty , Dept. of Electrical and Computer Engineering, Texas A&M Univ., College Station, USA
Zhenghao Zhang , Computer Science Dept., Florida State Univ., Tallahassee, USA
pp. 1057-1059

An array-CGH based analyzing tool for detecting unknown copy number variation (Abstract)

Kiejung Park , Division of Bio-Medical informatics, Center for Genome Science, Korea National Institute of Health, 187 Osongsaengmyeong2(i)-ro, Gangoe-myeon, Cheongwon-gun, Chungcheongbuk-do, Kor
Kwang Su Jung , Division of Bio-Medical informatics, Center for Genome Science, Korea National Institute of Health, 187 Osongsaengmyeong2(i)-ro, Gangoe-myeon, Cheongwon-gun, Chungcheongbuk-do, Kor
JongPill Choi , Division of Bio-Medical informatics, Center for Genome Science, Korea National Institute of Health, 187 Osongsaengmyeong2(i)-ro, Gangoe-myeon, Cheongwon-gun, Chungcheongbuk-do, Kor
pp. 1060

A software package for next-gen bisulfite sequencing data analysis (Abstract)

Dong-Sung Ryu , Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA
Huidong Shi , Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA
Suhas Sureshchandra , Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA
Jeong-Hyeon Choi , Cancer Center, Georgia Health Sciences University, GHSU, Augusta, GA, USA
Hwan-Gue Cho , Department of Computer Science and Engineering, Pusan National University, PNU, Busan, South Korea
pp. 1061-1062

Integrating a partial least squares model with an artificial neural network to discriminate FTIR spectra of virus infected vero cells at 6 hours post exposure (Abstract)

Ruli Wang , Georgia State University, Atlanta, GA
David Katz , Georgia State University, Atlanta, GA
Chadi Filfili , Georgia State University, Atlanta, GA
Jing Guo , Georgia State University, Atlanta, GA
Gary Hastings , Georgia State University, Atlanta, GA
John A. Ward , Brooke Army Medical Center, Fort Sam Houston, TX
Julia Hilliard , Georgia State University, Atlanta, GA
Yu-Sheng Hsu , Georgia State University, Atlanta, GA
pp. 1063-1065

Mining fetal magnetocardiogram data for high-risk fetuses (Abstract)

Dallas Snider , Department of Information Science, University of Arkansas at Little Rock
Xiaowei Xu , Department of Information Science, University of Arkansas at Little Rock
pp. 1066-1068

Modeling antigenic property of the hepatitis C virus NS3 protein (Abstract)

Yury Khudyakov , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
James Lara , Molecular Epidemiology & Bioinformatics Laboratory, Division of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, GA
pp. 110-117

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes (Abstract)

Ion Mandoiu , Department of Computer Science & Engineering, University of Connecticut, Storrs, CT 06269
Serghei Mangul , Department of Computer Science, Georgia State University, Atlanta, GA 30303
Adrian Caciula , Department of Computer Science, Georgia State University, Atlanta, GA 30303
Alex Zelikovsky , Department of Computer Science, Georgia State University, Atlanta, GA 30303
pp. 118-123

Visualization of tuberculosis patient and Mycobacterium tuberculosis complex genotype data via host-pathogen maps (Abstract)

Jacob Katz , Mathematical Sciences Department, Rensselaer Polytechnic Institute, Troy, NY
Janani Ranganathan , Information Technology, Rensselaer Polytechnic Institute, Troy, NY
Bulent Yener , Computer Science Department, Rensselaer Polytechnic Institute, Troy, NY
Cagri Ozcaglar , Computer Science Department, Rensselaer Polytechnic Institute, Troy, NY
Srivatsan Raghavan , Information Technology, Rensselaer Polytechnic Institute, Troy, NY
Kristin P. Bennett , Computer Science Department, Rensselaer Polytechnic Institute, Troy, NY
Amina Shabbeer , Computer Science Department, Rensselaer Polytechnic Institute, Troy, NY
Dan Croft , Mathematical Sciences Department, Rensselaer Polytechnic Institute, Troy, NY
pp. 124-129

QColors: An algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads (Abstract)

Austin Huang , Division of Infectious Disease
Rami Kantor , Division of Infectious Disease
Allison DeLong , Center for Statistical Sciences
Sorin Istrail , Department of Computer Science, Brown University Providence, RI, USA
Leeann Schreier , Division of Infectious Disease
pp. 130-136

A parametric Bayesian method to test the association of rare variants (Abstract)

Shuang Wang , Department of Biostatistics, Mailman School of Public Health, Columbia University
Yee Him Cheung , Department of Biostatistics, Mailman School of Public Health, Columbia University
Yufeng Shen , Initiative in Systems Biology, Columbia University
Itsik Pe'er , Initiative in Systems Biology, Columbia University
pp. 137-143

A conceptual data model for transcriptome project pipeline (Abstract)

Maristela T. Holanda , Computer Science Deparment, University of Brasilia, Brasilia, Brazil
Maria Emilia M. T. Walter , Computer Science Deparment, University of Brasilia, Brasilia, Brazil
Ruben Cruz Huacarpuma , Computer Science Deparment, University of Brasilia, Brasilia, Brazil
pp. 13-18

Modelling differential interferon resistance of HCV quasispecies (Abstract)

David S. Campo , Division of Viral Hepatitis, Centers of Disease Control and Prevention, Atlanta, GA, USA
Gilberto Vaughan , Division of Viral Hepatitis, Centers of Disease Control and Prevention, Atlanta, GA, USA
Zoya Dimitrova , Division of Viral Hepatitis, Centers of Disease Control and Prevention, Atlanta, GA, USA
Yury Khudyakov , Division of Viral Hepatitis, Centers of Disease Control and Prevention, Atlanta, GA, USA
Daryl T. Lau , Translational Liver Research, Division of Gastroenterology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA
Pavel Skums , Division of Viral Hepatitis, Centers of Disease Control and Prevention, Atlanta, GA, USA
pp. 144-148

Multiobjective optizition shuffled frog-leaping biclustering (Abstract)

Zhoujun Li , State Key Laboratory of Software Development Environment, Beihang University, Beijing, China
Xiaohua Hu , College of Information Science and Technology, Drexel University, Philadelphia, PA, USA
Junwan Liu , School of Computer & Information Engineering, Central South University of Forestry and Technology, Changsha, China
Yiming Chen , School of Computer, National University of Defense Technology Changsha, China
Junwan Liu , School of Computer, National University of Defense Technology Changsha, China
pp. 151-156

Meta-analysis of LC-MS based metabolomic experiments (Abstract)

Habtom Ressom , Department of Oncology, Georgetown University, DC
Bin Zhou , Department of Oncology, Georgetown University, DC
Rency S. Varghese , Department of Oncology, Georgetown University, DC
pp. 157-164

Professional tennis player ranking strategy based Monte Carlo feature selection (Abstract)

Bin Han , College of Life Information Science and Instrument Engineering, Hangzhou Dianzi University Hangzhou, P.R. China
Lei Zhu , College of Life Information Science and Instrument Engineering, Hangzhou Dianzi University Hangzhou, P.R. China
Lihua Li , College of Life Information Science and Instrument Engineering, Hangzhou Dianzi University Hangzhou, P.R. China
Ruifei Xie , College of Life Information Science and Instrument Engineering, Hangzhou Dianzi University Hangzhou, P.R. China
Juan Zhang , College of Life Information Science and Instrument Engineering, Hangzhou Dianzi University Hangzhou, P.R. China
pp. 165-172

saskPrimer -- An automated pipeline for design of intron-spanning PCR primers in non-model organisms (Abstract)

Isobel Parkin , Agriculture and Agri-Food Canada, 107 Science Place, Saskatoon, Saskatchewan, Canada S7N 0X2
Andrew Sharpe , NRC Plant Biotechnology Institute (NRC-PBI) National Research Council of Canada, 110 Gymnasium Place Saskatoon, Saskatchewan, Canada S7N 0W9
Christine Sidebottom , NRC Plant Biotechnology Institute (NRC-PBI) National Research Council of Canada, 110 Gymnasium Place Saskatoon, Saskatchewan, Canada S7N 0W9
Wayne E Clarke , Department of Computer Science, University of Saskatchewan, 176 Thorvaldson Bldg., 110 Science Place, Saskatoon, Saskatchewan, Canada S7N 5C9
pp. 173-177

Synthesizing Aligned Random Pattern Digraphs from protein sequence patterns (Abstract)

Andrew K. C. Wong , Systems Design Engineering, University of Waterloo, Waterloo, Canada
Annie En-Shiun Lee , Systems Design Engineering, University of Waterloo, Waterloo, Canada
pp. 178-185

Consistent detection of cancer biomarkers with linear models (Abstract)

E.M. Rivera , Bio IE Lab, Industrial Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
C. E. Isaza , Bio IE Lab, Industrial Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
Z. Irizarry , Bio IE Lab, Industrial Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
M. L. Sanchez-Pena , Bio IE Lab, Industrial Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
J. Seguel , Electrical &Computer Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
M. Cabrera-Rios , Bio IE Lab, Industrial Engineering Department, University of Puerto Rico - Mayagüez, Mayagüez, PR, USA
pp. 186-192

Brdicka curve -- A new source of biomarkers (Abstract)

Andrea Szaboova , Department of Cybernetics, Faculty of Electrical Engineering, CVUT, Prague, Czech Republic
Jiri Anyz , Department of Cybernetics, Faculty of Electrical Engineering, CVUT, Prague, Czech Republic
Vojtech Adam , Mendel University in Brno Brno, Czech Republic
Olga Stepankova , Department of Cybernetics, Faculty of Electrical Engineering, CVUT, Prague, Czech Republic
Lenka Vyslouzilova , Department of Cybernetics, Faculty of Electrical Engineering, CVUT, Prague, Czech Republic
Rene Kizek , Mendel University in Brno Brno, Czech Republic
pp. 193-198

Regularization of sequence data for machine learning (Abstract)

Bryan Bai , Sch. of Comput. Sci., Univ. of Guelph, Guelph, ON, Canada
S. C. Kremer , Sch. of Comput. Sci., Univ. of Guelph, Guelph, ON, Canada
pp. 19-25
Papers

A web interface for the quantification of microtubule dynamics (Abstract)

Paraskevi Giaanakakou , Winship Cancer Institute, Emory University, USA
Adam I. Marcus , Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, USA
Koon Yin Kong , School of Electrical and Computer Engineering, Georgia Institute of Technology, USA
May D. Wang , School of Electrical and Computer Engineering, Georgia Institute of Technology, USA
pp. 209-214

Finding a longest open reading frame of an alternatively spliced gene (Abstract)

Neil Moore , Department of Computer Science, University of Kentucky, Lexington, KY, USA
Jerzy Wl. Jaromczyk , Department of Computer Science, University of Kentucky, Lexington, KY, USA
pp. 215-222

Multi-source kernel k-means for clustering heterogeneous biomedical data (Abstract)

Piyaphol Phoungphol , Department of Computer Science, Georgia State University, Atlanta, GA 30302-3994, USA
Yanqing Zhang , Department of Computer Science, Georgia State University, Atlanta, GA 30302-3994, USA
pp. 223-228

Systematic discovery of condition specific Wnt signaling subnetworks (Abstract)

Sudipto Saha , Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, USA
Rob M. Ewing , Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, USA
pp. 229-234

An improved data integration methodology for system biology (Abstract)

E. Olusegun George , Dept. Of Mathematical Sciences, University of Memphis, Memphis, USA
Xiaodong Zhou , Dept. of Anatomy and Neurobiology, University of Tennessee Health Science Center, Dept. of Computer Science, University of Memphis, Memphis, USA
pp. 235-240

Associating gene functional groups with multiple clinical conditions using Jaccard similarity (Abstract)

Dalal M. Elkaffash , Department of Clinical Pathology, Faculty of Medicine, Alexandria University
Noha A. Yousri , Computer and System Engineering, Faculty of Engineering, Alexandria University
pp. 241-246

Rapid identification of multi-PTMs peptide sequence tags with a graph search approach (Abstract)

Mugizi Rwebangira , Department of Systems and Computer Science, Howard University, Washington, DC 20059
Legand Burge , Department of Systems and Computer Science, Howard University, Washington, DC 20059
Chunmei Liu , Department of Systems and Computer Science, Howard University, Washington, DC 20059
Hui Li , Department of Systems and Computer Science, Howard University, Washington, DC 20059
William Southerland , Department of Systems and Computer Science, Howard University, Washington, DC 20059
pp. 247-250

Rapid generation of peptide sequence tags with a graph search algorithm (Abstract)

Chunmei Liu , Department of Systems and Computer Science, Howard University, Washington, DC 20059
Mugizi Rwebangira , Department of Systems and Computer Science, Howard University, Washington, DC 20059
Legand Burge , Department of Systems and Computer Science, Howard University, Washington, DC 20059
William Southerland , Department of Biochemistry, Howard University, Washington, DC 20059
Hui Li , Department of Systems and Computer Science, Howard University, Washington, DC 20059
pp. 251-254

Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search (Abstract)

Kathryn Dempsey , College of Information Science & Technology, University of Nebraska at Omaha Department of Pathology & Microbiology, University of Nebraska Medical Center
Dhundy Bastola , College of Information Science & Technology, University of Nebraska at Omaha Department of Pathology & Microbiology, University of Nebraska Medical Center
Ishwor Thapa , College of Information Science & Technology, University of Nebraska at Omaha Department of Pathology & Microbiology, University of Nebraska Medical Center
Hesham Ali , College of Information Science & Technology, University of Nebraska at Omaha Department of Pathology & Microbiology, University of Nebraska Medical Center
pp. 255-261

Integrating sequence conservation features and a domain-domain interaction network to detect disease-associated nsSNPs (Abstract)

Rui Jiang , MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing, 100084, China
Jiaxin Wu , MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST/Department of Automation, Tsinghua University, Beijing, 100084, China
pp. 262-267

Correlation of genomics features with the date and party hub distinction: A view from three dimensional protein structures (Abstract)

Haiying Wang , School of Computing and Mathematics, Computer Science Research Institute University of Ulster, Co. Antrim, UK
Huiru Zheng , School of Computing and Mathematics, Computer Science Research Institute University of Ulster, Co. Antrim, UK
pp. 268-273

SPATA: A seeding and patching algorithm for de novo transcriptome assembly (Abstract)

Tin Chi Nguyen , Department of Computer Science, Wayne State University, Detroit, MI 48202, USA
Zhiyu Zhao , The LONI Institute, Baton Rouge, LA, USA
Dongxiao Zhu , Department of Computer Science, Wayne State University, Detroit, MI 48202, USA
Nan Deng , Department of Computer Science, Wayne State University, Detroit, MI 48202, USA
Kristen Marie Johnson , Department of Computer Science, University of New Orleans, New Orleans, LA 70148, USA
pp. 26-33

Development and implementation of a novel computational tool for an efficient construction of drug-target interactome (Abstract)

Paul Hart , Department of Biomedical Engineering, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
Zhongming Zhao , Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
Jingchun Sun , Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN 37232, USA
pp. 274-279

Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach (Abstract)

Junbo Duan , Department of Biomedical Engineering, Tulane University, New Orleans, USA
Ji-Gang Zhang , Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, USA
Yu-Ping Wang , Department of Biomedical Engineering, Tulane University, New Orleans, USA
Hongbao Cao , Department of Biomedical Engineering, Tulane University, New Orleans, USA
Wenlong Tang , Department of Biomedical Engineering, Tulane University, New Orleans, USA
Dongdong Lin , Department of Biomedical Engineering, Tulane University, New Orleans, USA
pp. 282-288

Random forest: A reliable tool for patient response prediction (Abstract)

Randall Wald , Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, Florida 33431
Amri Napolitano , Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, Florida 33431
David Dittman , Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, Florida 33431
Taghi M. Khoshgoftaar , Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, Florida 33431
pp. 289-296

Optimal delivery of volumetric modulated arc therapy (VMAT) for moving target (Abstract)

Ovidiu Daescu , Department of Computer Science, University of Texas at Dallas Richardson, USA
Sairam Behera , Department of Computer Science, University of Texas at Dallas Richardson, USA
Lech Papiez , Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, USA
pp. 297-304

An adaptive feature reduction algorithm for cancer classification using wavelet decomposition of serum proteomic and DNA microarray data (Abstract)

Sabrina Rashid , Dept. of ECE, University of British Columbia, Vancouver, Canada
Golam Morshed Maruf , Dept. of CSE, United International University, Dhaka, Bangladesh
pp. 305-312

Ab initio protein structure prediction based on memetic algorithm and 3D FCC lattice model (Abstract)

Jyh-Jong Tsay , Department of Computer Science and Information Engineering, National Chung Cheng University, Chiayi County, Taiwan
Shih-Chieh Su , Department of Computer Science and Information Engineering, National Chung Cheng University, Chiayi County, Taiwan
pp. 315-318

Rigid region pairwise sequence alignment (Abstract)

Anastasia Kurdia , Smith College 7 College, Lane Northampton, MA
Ovidiu Daescu , University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX 75080
Marko Zivanic , University of Texas at, 800 W Campbell Rd, Richardson, TX 75080
pp. 319-326

Amino acid encoding schemes for machine learning methods (Abstract)

Stefan C. Kremer , School of Computer Science, University of Guelph, Guelph, Canada
Masood Zamani , School of Computer Science, University of Guelph, Guelph, Canada
pp. 327-333

On the energy of bifurcated hydrogen bonds for protein structure prediction (Abstract)

Sajal Dash , Department Of Computer Science, UNC Chapel Hill
Jack Snoeyink , Department Of Computer Science, UNC Chapel Hill
pp. 334-337

Encoding protein structure with functions on graphs (Abstract)

Promita Bose , Department of Computer Science, Georgia State University
Xiaxia Yu , Department of Computer Science, Georgia State University
Robert W. Harrison , Department of Computer Science, Georgia State University
pp. 338-344

Analysis of relevant physicochemical properties in obligate and non-obligate protein-protein interactions (Abstract)

Md. Mominul Aziz , School of Computer Science, University of Windsor, 401 Sunset Ave., Windsor, ON, N9B 3P4, Canada
Mina Maleki , School of Computer Science, University of Windsor, 401 Sunset Ave., Windsor, ON, N9B 3P4, Canada
Luis Rueda , School of Computer Science, University of Windsor, 401 Sunset Ave., Windsor, ON, N9B 3P4, Canada
pp. 345-351

A novel framework for chimeric transcript detection based on accurate gene fusion model (Abstract)

Francesco Abate , Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
Alberto Ferrarini , Department of Biotechnology, Università di Verona, Verona, Italy
Enrico Macii , Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
Andrea Acquaviva , Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
Simona Soverini , Institute of Medical Oncology and Hematology, Università di Bologna, Bologna, Italy
Massimo Delledonne , Department of Biotechnology, Università di Verona, Verona, Italy
Giulia Paciello , Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
Elisa Ficarra , Department of Control and Computer Engineering, Politecnico di Torino, Torino, Italy
Giovanni Martinelli , Institute of Medical Oncology and Hematology, Università di Bologna, Bologna, Italy
pp. 34-41

Recursive protein modeling: A divide and conquer strategy for protein structure prediction and its case study in CASP9 (Abstract)

Xin Deng , Department of Computer Science, University of Missouri, Columbia, MO 65211, USA
Jianlin Cheng , Department of Computer Science, Informatics, Institute, C. Bond Life Science Center, University of Missouri, Columbia, MO 65211, USA
Zheng Wang , Department of Computer Science, University of Missouri, Columbia, MO 65211, USA
Jesse Eickholt , Department of Computer Science, University of Missouri, Columbia, MO 65211, USA
pp. 352-357

Protein docking with information on evolutionary conserved interfaces (Abstract)

Bahar Akbal-Delibas , Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125
Amarda Shehu , Department of Computer Science, George Mason University, Fairfax, VA 22030
Irina Hashmi , Department of Computer Science, George Mason University, Fairfax, VA 22030
Nurit Haspel , Department of Computer Science, University of Massachusetts at Boston, Boston, MA, 02125
pp. 358-365

Protein conformational search with geometric projections (Abstract)

Brian Olson , Department of Computer Science, George Mason University, Fairfax, VA, 22030, USA
S. Farid Hendi , Department of Computer Science, George Mason University, Fairfax, VA, 22030, USA
Amarda Shehu , Department of Computer Science, George Mason University, Fairfax, VA, 22030, USA
pp. 366-373

The development of a proteomic analyzing pipeline to identify proteins with multiple RRMs and predict their domain boundaries (Abstract)

Legand Burge , Department of Systems Computer Science, 2300 Sixth Street, NW Washington, DC 20059, USA
William Southerland , Department of Biochemistry, 2400 Sixth Street, NW Washington, DC 20059, USA
Kyung Dae Ko , Department of Systems Computer Science, 2300 Sixth Street, NW Washington, DC 20059, USA
Chunmei Liu , Department of Systems Computer Science, 2300 Sixth Street, NW Washington, DC 20059, USA
Mugizi Robert Rwebangira , Department of Systems Computer Science, 2300 Sixth Street, NW Washington, DC 20059, USA
pp. 374-381

P.R.E.S.S. -- An R-package for exploring residual-level protein structural statistics (Abstract)

Zhijun Wu , Program on Bioinformatics and Computational Biology, Iowa State University, Ames, Iowa 50011
Steve Bonett , Summer REU Program on Computational Systems Biology, Iowa State University, Ames, Iowa 50011
Andrzej Kloczkowski , Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Iowa 50011
Robert Jernigan , Program on Bioinformatics and Computational Biology, Iowa State University, Ames, Iowa 50011
Yuanyuan Huang , Program on Bioinformatics and Computational Biology, Iowa State University, Ames, Iowa 50011
pp. 382-389

A symmetry-driven BP algorithm for the Discretizable Molecular Distance Geometry Problem (Abstract)

C. Lavor , IMECC-UNICAMP, Campinas-SP, Brazil
L. Liberti , LIX, Ecole Polytechnique, Palaiseau, France
A. Mucherino , IRISA, University of Rennes 1, Rennes, France
pp. 390-395

Hardware simulation of yeast glycolytic oscillations (Abstract)

Jaime Velasco-Medina , Grupo de Bionanoelectrónica, Universidad del Valle, Cali, Colombia
Jorge E. Duarte , Grupo de Bionanoelectrónica, Universidad del Valle, Cali, Colombia
Pedro A. Moreno , Grupo de Bioinformática, Universidad del Valle, Cali, Colombia
pp. 396-399

Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization (Abstract)

Hong-Wen Deng , Department of Biostatistics and Bioinformatics, 1440 Canal Street, New Orleans, USA
Ji-Gang Zhang , Department of Biostatistics and Bioinformatics, 1440 Canal Street, New Orleans, USA
John Lefante , Department of Biostatistics and Bioinformatics, 1440 Canal Street, New Orleans, USA
Junbo Duan , Department of Biostatistics and Bioinformatics, 1440 Canal Street, New Orleans, USA
Yu-Ping Wang , Department of Biostatistics and Bioinformatics, 1440 Canal Street, New Orleans, USA
pp. 3-12

Refinement of docked protein complex structures using evolutionary traces (Abstract)

Bahar Akbal-Delibas , Department of Computer Science, University of Massachusetts Boston, Boston, MA, 02125
Nurit Haspel , Department of Computer Science, University of Massachusetts Boston, Boston, MA, 02125
Amarda Shehu , Department of Computer Science, George Mason University, Fairfax, VA 22030
Irina Hashmi , Department of Computer Science, George Mason University, Fairfax, VA 22030
pp. 400-404

A distance and orientation dependent potential energy function with cluster energy (Abstract)

Lin Chen , Department of Computer Science, Old Dominion University
Jing He , Department of Computer Science, Old Dominion University
pp. 405-409

Normal mode analysis of protein structure dynamics based on residue contact energy (Abstract)

Weitao Sun , Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University, Beijing, 100084, China
pp. 410-415

SCOP family fingerprints: An information theoretic approach to structural classification of protein domains (Abstract)

Francesco Fabris , Dipartimento di Matematica e Informatica, Università di Trieste, Trieste, Italia
Alberto Casagrande , Dipartimento di Matematica e Informatica, Università di Trieste, Trieste, Italia
pp. 416-423

A statistical model of overlapping volume in ligand binding cavities (Abstract)

Soutir Bandyopadhyay , Dept. of Mathematics, Lehigh University Bethlehem, PA, USA
Brian Y. Chen , Dept. of Computer Science and Engineering, Lehigh University, Bethlehem, PA, USA
pp. 424-431

A fragment based alignment in linear space (Abstract)

Alba C. M. A. Melo , University of Brasilia (UnB), Brasilia, Brazil, University of Ottawa, Ottawa, Canada
Azzedine Boukerche , University of Brasilia (UnB), Brasilia, Brazil, University of Ottawa, Ottawa, Canada
Ricardo P. Jacobi , University of Brasilia (UnB), Brasilia, Brazil, University of Ottawa, Ottawa, Canada
Jan M. Correa , University of Brasilia (UnB), Brasilia, Brazil, University of Ottawa, Ottawa, Canada
pp. 42-49

Using rigidity analysis to probe mutation-induced structural changes in proteins (Abstract)

Filip Jagodzinski , Department of Computer Science, University of Massachusetts Amherst, Amherst, MA; USA
Jeanne Hardy , Department of Chemistry, University of Massachusetts, Amherst, MA; USA
Ileana Streinu , Department of Computer Science, Smith College, Northampton, MA; USA and University of Massachusetts Amherst, Amherst, MA; USA
pp. 432-437

Cluster analysis of MiRNAs microarray data and prediction of lupeol's anti-cancer path (Abstract)

Dechang Xu , School of Food Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, 150001, China
Cuihong Dai , School of Food Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, 150001, China
Dachuan Liu , School of Food Science and Engineering, Harbin Institute of Technology, Harbin, Heilongjiang, 150001, China
pp. 440-445

Identifying multiple stem-loops pre-miRNA using support vector machine (Abstract)

Yi-Ping Phoebe Chen , Department of Computer Science and Computer Engineering, La Trobe University, Victoria, 3086, Melbourne, Australia
Xiaofeng Song , Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 China
Ping Han , Department of Gynecology and Obstetrics, The First Affiliated Hospital with Nanjing Medical, University, Nanjing 210029 China
Minghao Wang , Department of Biomedical Engineering, Nanjing University of Aeronautics and Astronautics, Nanjing 210016 China
pp. 446-448

Gene sets enrichment analysis of miRNA expression profile (Abstract)

Hung-I Harry Chen , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
Patricia C. Sanchez-Diaz , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
Tzu-Hung Hsiao , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
Yufei Huang , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
Jaclyn Y. Hung , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
Yidong Chen , Greehey Children's Cancer Research Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
pp. 449-454

Topology-based scoring method for identification of responsive protein-protein interaction subnetwork (Abstract)

Shouguo Gao , Department Of Physics & The Comprehensive Diabetes Center, Campbell Hall, 1300 University, Blvd, University Of Alabama At Birmingham, Birmingham, AL 35294, USA
Xujing Wang , Department Of Physics & The Comprehensive Diabetes Center, Campbell Hall, 1300 University, Blvd, University Of Alabama At Birmingham, Birmingham, AL 35294, USA
pp. 457-464

Module detection for bacteria based on spectral clustering of protein-protein functional association networks (Abstract)

Fun Choi Chan , Department of Mathematical Sciences, Georgia Southern University, Statesboro, GA, USA
Hongwei Wu , School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA
Rocio Alba-Flores , Department of Mechanical and Electrical Engineering, Georgia Southern University, Statesboro, GA, USA
Yaming Lin , School of Electrical and Computer Engineering, Georgia Institute of Technology, Atlanta, GA, USA
pp. 465-472

Network based subcellular localization prediction for multi-label proteins (Abstract)

Jhih-rong Lin , Department of Computer Science and Engineering, University of South Carolina, Columbia, USA
Jianjun Hu , Department of Computer Science and Engineering, University of South Carolina, Columbia, USA
Ananda Mohan Mondal , Department of Computer Science and Engineering, University of South Carolina, Columbia, USA
Ananda Mohan Mondal , Department of Mathematics and Computer Science, Claflin University, Orangeburg, USA
pp. 473-480

VeNet: A framework for the analysis of protein interaction networks through vector space embedding (Abstract)

Pierangelo Veltri , Department of Medical and Surgical Sciences, University of Catanzaro, Italy
Pietro Hiram Guzzi , Department of Medical and Surgical Sciences, University of Catanzaro, Italy
Mario Cannataro , Department of Medical and Surgical Sciences, University of Catanzaro, Italy
pp. 481-487

A new functional association-based protein complex prediction (Abstract)

Yanwei Huang , Computer Science, Virginia Tech Blacksburg, USA
David R Bevan , Biochemistry Virginia Tech, Blacksburg, USA
Mingming Liu , Computer Science, Virginia Tech Blacksburg, USA
Liqing Zhang , Computer Science, Virginia Tech Blacksburg, USA
pp. 488-494

Using semantic similarity to detect features in yeast protein complexes (Abstract)

Mario Cannataro , University of Catanzaro, Italy
Pietro Hiram Guzzi , University of Catanzaro, Italy
Marianna Milano , University of Catanzaro, Italy
Pierangelo Veltri , University of Catanzaro, Italy
pp. 495-502

A hierarchical link clustering based approach for identifying protein complexes by incorporating core-attachment structure (Abstract)

Lei Lin , Intelligent Technology & Natural Language Processing Lab, Harbin Institute of Technology, Harbin, China
Yinhai Liu , Intelligent Technology & Natural Language Processing Lab, Harbin Institute of Technology, Harbin, China
Chengjie Sun , Intelligent Technology & Natural Language Processing Lab, Harbin Institute of Technology, Harbin, China
Yang Yu , Intelligent Technology & Natural Language Processing Lab, Harbin Institute of Technology, Harbin, China
Xiaolong Wang , Intelligent Technology & Natural Language Processing Lab, Harbin Institute of Technology, Harbin, China
pp. 503-508

Evaluation of essential genes in correlation networks using measures of centrality (Abstract)

Kathryn Dempsey , College of Information Science & Technology, University of Nebraska at Omaha, Department of Pathology & Microbiology, University of Nebraska Medical Center
Hesham Ali , College of Information Science & Technology, University of Nebraska at Omaha, Department of Pathology & Microbiology, University of Nebraska Medical Center
pp. 509-515

Evaluation of normalization methods for RNA-Seq gene expression estimation (Abstract)

John H. Phan , The Wallace H. Coulter Biomedical Engineering Department, Georgia Institute of Technology and Emory University
May D. Wang , The Wallace H. Coulter Biomedical Engineering Department, Georgia Institute of Technology and Emory University
Po-Yen Wu , Department of Electrical and Computer Engineering, Georgia Institute of Technology
Fengfeng Zhou , Research Center for Biomedical Information Technology, Institute of Biomedical and Health, Engineering, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences
pp. 50-57

Indoor signage detection based on saliency map and bipartite graph matching (Abstract)

Shuihua Wang , Department of Electrical Engineering, The City College of New York, NY, 10031, USA
Yingli Tian , Department of Electrical Engineering, The City College of New York, NY, 10031, USA
pp. 518-525

Finding objects for blind people based on SURF features (Abstract)

Ricardo Chincha , Department of Electrical Engineering, The City College of New York, New York, NY, 10031, USA
YingLi Tian , Department of Electrical Engineering, The City College of New York, New York, NY, 10031, USA
pp. 526-527

Identifying medicine bottles by incorporating RFID and video analysis (Abstract)

Qingshan Liu , School of Information & Control Engineering, Nanjing University of Information Science and Technology, China
Faiz M. Hasanuzzaman , Department of Electrical Engineering, The City College of New York, New York NY, USA
YingLi Tian , Department of Electrical Engineering, The City College of New York, New York NY, USA
pp. 528-529

Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in medline abstracts (Abstract)

Manabu Torii , School of Medicine, Georgetown University, Washington, DC, USA
Yang Chen , Dept. of Computer Science, Virginia Tech, Falls Church, VA, USA
Hongfang Liu , College of Medicine, Mayo Clinic Rochester, MN, USA
Chang-Tien Lu , Dept. of Computer Science, Virginia Tech Falls Church, VA, USA
pp. 530-537

Comparison of classification techniques-SVM and naives bayes to predict the Arboviral disease-Dengue (Abstract)

Shameem Fathima , College of Computers and Information Technology, Taif University, Saudi Arabia
Nisar Hundewale , College of Computers and Information Technology, Taif University, Saudi Arabia
pp. 538-539

Reduction of periodic motion artifacts from impedance plethysmography (Abstract)

Kevin Ward , Dept. of Emergency Med., Virginia Commonwealth Univ., Richmond, VA, USA
K. Najarian , Comput. Sci. Dept., Virginia Commonwealth Univ., Richmond, VA, USA
Rosalyn Hobson , Electr. & Comput. Eng. Dept., Virginia Commonwealth Univ., Richmond, VA, USA
A. Belle , Comput. Sci. Dept., Virginia Commonwealth Univ., Richmond, VA, USA
S. Ansari , Comput. Sci. Dept., Virginia Commonwealth Univ., Richmond, VA, USA
pp. 540-547

A hybrid approach for hemorrhage segmentation in pelvic CT scans (Abstract)

Jie Wu , Department of Computer Science, Virginia Commonwealth University, Richmond, USA
Rosalyn H. Hargraves , Department of Electrical and Computer Engineering and VCURES, Virginia Commonwealth University, Richmond, USA
Ashwin Belle , Department of Computer Science, Virginia Commonwealth University, Richmond, USA
Yang Tang , Department of Radiology, Virginia Commonwealth University, Richmond, USA
Charles H. Cockrell , Department of Radiology and Virginia Commonwealth, University Reanimation Engineering Science Center (VCURES), Virginia Commonwealth University, Richmond, USA
Kevin R. Ward , Department of Emergency Medicine and VCURES, Virginia Commonwealth University, Richmond, USA
Kayvan Najarian , Department of Computer Science and VCURES, Virginia Commonwealth University, Richmond, USA
Pavani Davuluri , Department of Electrical and Computer Engineering, Virginia Commonwealth University, Richmond, USA
pp. 548-554

A physiological signal processing system for optimal engagement and attention detection (Abstract)

K. Najarian , Dept. of Comput. Sci., Virginia Commonwealth Univ., Richmond, VA, USA
R. Hobson , Dept. of Electr. Eng., Virginia Commonwealth Univ., Richmond, VA, USA
A. Belle , Dept. of Comput. Sci., Virginia Commonwealth Univ., Richmond, VA, USA
pp. 555-561

Margin-maximized redundancy-minimized SVM-RFE for diagnostic classification of mammograms (Abstract)

Saejoon Kim , Dept. of Computer Science and Eng., Sogang University, Seoul, Korea
pp. 562-569

Towards an environment for data mining based analysis processes in bioinformatics & personalized medicine (Abstract)

Stefan Riiping , Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany
Francesca Buffa , Weatherall Institute of Molecular Medicine, University of Oxford John Radcliffe Hospital, Headington, Oxford OX3 9DS, United Kingdom
Dennis Wegener , Fraunhofer IAIS, Schloss Birlinghoven, 53754 Sankt Augustin, Germany
Simona Rossi , Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
Mauro Delorenzi , Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland
pp. 570-577

Application of density estimation algorithms in analyzing co-morbidities of migraine (Abstract)

Yen-Jen Oyang , Department of Computer Science and Information Engineering, National Taiwan University, Taipei City, Taiwan, ROC
Meng-Han Yang , Department of Computer Science and Information Engineering, National Taiwan University, Taipei City, Taiwan, ROC
Jong-Ling Fuh , Department of Neurology, Neurological Institute, Taipei Veterans General Hospital, Taipei City, Taiwan, ROC
pp. 578-585

Extracting biomedical concepts from fulltext by relative importance in a graph model (Abstract)

Hwanjo Yu , CSE Department, POSTECH, Pohang, South, Korea
Said Bleik , Information, Systems, New Jersey, Institute of Technology
Min Song , Information, Systems, New Jersey, Institute of Technology
Wook-Shin Han , CE Department, Kyungpook, National University, Daegu, South Korea
pp. 586-593

A ROI-based algorithm for the classification of PET neuroimages (Abstract)

P. Vizza , Experimental and Clinical Medicine Department, University Magna Graecia, Catanzaro, Italy
G. L. Cascini , Experimental and Clinical Medicine Department, University Magna Graecia, Catanzaro, Italy
P. Veltri , Experimental and Clinical Medicine Department, University Magna Graecia, Catanzaro, Italy
pp. 594-595

3D point cloud sensors for low-cost medical in-situ visualization (Abstract)

Alessio Pierluigi Placitelli , Institute of High Performance Computing and Networking, National Research Council of Italy, ICAR-CNR, Via Pietro Castellino 111, 80131 Napoli, Italy
Luigi Gallo , Institute of High Performance Computing and Networking, National Research Council of Italy, ICAR-CNR, Via Pietro Castellino 111, 80131 Napoli, Italy
pp. 596-597

GLASS: Genomic Literature Area Sequence Search (Abstract)

Michael D. Kane , Purdue University
John A. Springer , Purdue University
Siddharth Pandey , Purdue University
pp. 598-599

Fracture detection and quantitative measure of displacement in pelvic CT images (Abstract)

Pavani Davuluri , Department of Electrical & Computer Engineering, Virginia Commonwealth University, Richmond, Virginia, USA
Charles H. Cockrell , Department of Radiology and Virginia, Commonwealth University Reanimation, Engineering Science Center (VCURES), Virginia Commonwealth University, Richmond, Virginia, USA
Jie Wu , Department of Computer Science, Virginia Commonwealth University, Richmond, Virginia, USA
Kayvan Najarian , Department of Computer Science and VCURES, Virginia Commonwealth University, Richmond, Virginia, USA
Ashwin Belle , Department of Computer Science, Virginia Commonwealth University, Richmond, Virginia, USA
Yang Tang , Department of Radiology, Virginia Commonwealth University, Richmond, Virginia, USA
Rosalyn S. Hobson , Department of Electrical & Computer, Engineering and VCURES, Virginia Commonwealth University, Richmond, Virginia, USA
Kevin R. Ward , Department of Emergency Medicine and VCURES, Virginia Commonwealth University, Richmond, Virginia, USA
pp. 600-606

An initial study of full parsing of clinical text using the Stanford Parser (Abstract)

Min Jiang , Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, TN
Yang Huang , Kaiser Permanente, San Diego, CA
Samir AbdelRahman , Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, TN
Jung-wei Fan , Kaiser Permanente, San Diego, CA
Hua Xu , Department of Biomedical Informatics, Vanderbilt University, School of Medicine, Nashville, TN
pp. 607-614

Computational analysis of HIV-1 evolution and epidemiology (Abstract)

Sergei L Kosakovsky Pond , Department of Medicine, University of California San Diego, San Diego, CA, USA
pp. 60-63

An enhanced graph-oriented approach for change management in distributed biomedical ontologies and linked data (Abstract)

Arash Shaban-Nejad , McGill Clinical & Health Informatics, Departments of Epidemiology & Biostatistics, Faculty of Medicine, McGill University Montreal, Quebec, Canada
Volker Haarslev , Department of Computer Science and Software Engineering, Concordia University Montreal, Quebec, Canada
pp. 615-622

Detection of lobular carcinoma in situ(LCIS) by image analysis (Abstract)

Desok Kim , Department of Electrical Engineering, Korea Advanced, Institute of Science and Technology, Daejeon, South, Korea
Sujin Kim , Division of Biomedical Informatics, University of Kentucky, Lexington, Kentucky, USA
Hee Jae Joo , Department of Pathology, Ajou University Hospital, Suwon, South Korea
Hyun-Joo Choi , Department of Pathology, St. Vincent's Hospital, The Catholic University, Suwon, South Korea
pp. 623-624

Dealing with reusability and reproducibility for scientific workflows (Abstract)

Luciana Gomes , Departamento de Informatica, PUC-Rio, Rio de Janeiro, Brasil
Stevens K. Rehen , Laboratorio Nacional de Celulas-tronco Embrionarias UFRJ, Rio de Janeiro, Brasil
Sergio Lifschitz , Departamento de Informatica, PUC-Rio, Rio de Janeiro, Brasil
pp. 625-632

A framework for designing compliance conform processes in clinical trials (Abstract)

Jorg Schlundt , PRODATO Integration Technology GmbH
Stefan Jablonski , Chair of Databases and Information Systems, University of Bayreuth
pp. 633-634

Semi-automatic epilepsy spike detection from EEG signal using Genetic Algorithm and Wavelet transform (Abstract)

Hamid Soltanian-Zadeh , Image Analysis Lab., Department of Radiology, Henry, Ford Hospital, Detroit, Michigan, USA
Yanqing Zhang , Department of Computer Science, Georgia State, University, Atlanta, GA, USA
Zainab Haydari , Department of Computer Science, Georgia State, University, Atlanta, GA, USA
pp. 635-638

Bayesian network model for diagnosis of Social Anxiety Disorder (Abstract)

Farnaz Jeddi Moghaddam , Dept. of Computer Engineering, Islamic Azad University, North Tehran Branch, Tehran, Iran
Simin Sari , Dept. of Computer Engineering, Islamic Azad University, North Tehran Branch, Tehran, Iran
Zakiyeh Shojaei Estabragh , Dept. of Computer Engineering, Islamic Azad University, North Tehran Branch, Tehran, Iran
Koosha Sadeghi Oskooyee , Dept. of Computer Engineering, Islamic Azad University, North Tehran Branch, Tehran, Iran
Mohammad Mansour Riahi Kashani , Dept. of Computer Engineering, Islamic Azad University, North Tehran Branch, Tehran, Iran
pp. 639-640

Development of glandular shape analysis for computer aided detection of prostatic cancer in hematoxylin-stained histologic slides (Abstract)

Mark Gregson , Clinical Imaging at Leica, Microsystems, Newcastle upon Tyne, UK
Hayley C. Whitaker , Cancer Research UK, Cambridge Research, Institute, Cambridge, UK
William J. Howat , Cancer Research UK, Cambridge Research, Institute, Cambridge, UK
Desok Kim , Electrical Engineering, KAIST, Daejeon, Korea
Ilma Andayana , Electrical Engineering, KAIST, Daejeon, Korea
pp. 641-642

Lessons learned in improving the adoption of a real-time NLP decision support system (Abstract)

Michael Selter , Kaiser Permanente Southern California Pasadena, CA, USA
Daniel Zisook , Kaiser Permanente Southern California Pasadena, CA, USA
Yunan Chen , Department of Informatics, University of California, Irvine, Irvine, CA, USA
Yang Huang , Kaiser Permanente Southern California Pasadena, CA, USA
John Mattison , Kaiser Permanente Southern California Pasadena, CA, USA
Paul Minardi , Kaiser Permanente Southern California Pasadena, CA, USA
pp. 643-648

Using a feedback system to enhance chart note quality in Electronic Health Records (Abstract)

King-Ip Lin , Dept. of Comput. Sci., Univ. of Memphis, Memphis, TN, USA
V. Datla , Dept. of Comput. Sci., Univ. of Memphis, Memphis, TN, USA
L. Morrison , Dept. of Educ. & Curriculum, Southern Illinois Univ., Springfield, IL, USA
M. Louwerse , Dept. of Psychol., Univ. of Memphis, Memphis, TN, USA
pp. 649-654
Papers

A smart context-aware mobile monitoring system for heart patients (Abstract)

Giuseppe De Pietro , Institute of High Performance Computing and Networking, National Research Council of Italy (ICAR - CNR)
Giovanna Sannino , Institute of High Performance Computing and Networking, National Research Council of Italy (ICAR - CNR)
pp. 655-695

Genomic profiling by machine learning (Abstract)

Zhiping Zhang , Tongji School of Pharmacy, Huazhong University of Science and Technology, P.R. China
Honghuang Lin , Department of Medicine, Boston University School of Medicine, USA
pp. 662-668

Classification of poor contrast mammograms using a novel and fast boundary detection technique (Abstract)

Mahua Bhattacharya , Indian Institute of lnformation Technology and Management, Gwalior, India
Arpita Das , Institute of Radio Physics and Electronics, University of Calcutta, India
Partha P Goswami , Institute of Radio Physics and Electronics, University of Calcutta, India
Susanta Sen , Institute of Radio Physics and Electronics, University of Calcutta, India
pp. 669-676

A cDNA microarray for rapid and economical identification of HLA profiles of individuals (Abstract)

Guang Lan Zhang , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Ellis L. Reinherz , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Derin B. Keskin , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Vladimir Brusic , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
pp. 677-679

Probe design optimization of HLA microarray: Data cleaning of probe signals from cDNA tiling microarray: Outlier detection, noise reduction, and identification of uninformative probes in HLA typing application (Abstract)

Jae Young Lee , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
Vladimir Brusic , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Guang Lan Zhang , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Esma Dilek , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
Lou Chitkushev , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
Tanya Zlateva , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
pp. 680-682

Visualization tools for presenting and analysis of global landscapes of vaccine targets (Abstract)

Vladimir Brusic , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Tanya Zlateva , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
Lou Chitkushev , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
Guang Lan Zhang , Cancer Vaccine Center, Dana-Farber Cancer Institute, Boston, MA, USA
Suresh Kalathur , Computer Science Department, Metropolitan College, Boston University, Boston, MA, USA
pp. 683-688

CUDA-LR: CUDA-accelerated logistic regression analysis tool for gene-gene interaction for genome-wide association study (Abstract)

Sungyoung Lee , Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea
Taesung Park , Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea
Ik-Soo Huh , Department of Statistics, Seoul National University, Seoul 151-747, Korea
Min-Seok Kwon , Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea
pp. 691-695

A hybrid Bayesian Network/Structural Equation Modeling (BN/SEM) approach for detecting physiological networks for obesity-related genetic variants (Abstract)

Jacqueline J. Harris , Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham
Christine W. Duarte , Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham
Jose R. Fernandez , Department of Nutrition Sciences, University of Alabama at Birmingham
Michelle Cardel , Department of Nutrition Sciences, University of Alabama at Birmingham
Yann C. Klimentidis , Section on Statistical Genetics, Department of Biostatistics, University of Alabama at Birmingham
pp. 696-702

GWAS-GMDR: A program package for genome-wide scan of gene-gene interactions with covariate adjustment based on multifactor dimensionality reduction (Abstract)

Sungyoung Lee , Interdisciplinary program in Bioinformatics, Seoul National University, Korea
Min-Seok Kwon , Interdisciplinary program in Bioinformatics, Seoul National University, Korea
Taesung Park , Interdisciplinary program in Bioinformatics, Seoul National University, Korea
Junghyun Namkung , Interdisciplinary program in Bioinformatics, Seoul National University, Korea
Wonil Chung , Department of Statistics, Seoul National University, Korea
Sung-Gon Yi , Department of Statistics, Seoul National University, Korea
Kyunga Kim , Department of Statistics, Seoul National University, Korea
pp. 703-707

A chi-square test for detecting multiple joint genetic variants in genome-wide association studies (Abstract)

Huh Ik-Soo , Department of Statistics, Seoul National University, Seoul 151-747, Korea
Sohee-Oh , Department of Statistics, Seoul National University, Seoul 151-747, Korea
Taesung Park , Department of Statistics, Seoul National University, Seoul 151-747, Korea
pp. 708-713

Robust analysis of related samples under the presence of population substructure (Abstract)

Sungho Won , Department of Applied Statistics, Chung-Ang University, Seoul, Republic of Korea
Sungkyoung Choi , Department of Applied Statistics, Chung-Ang University, Seoul, Republic of Korea
pp. 714-720

Variations in edge betweenness measure for gene regulatory networks (Abstract)

Rauf Ahmed Shams Malick , Department of Computer Science, University Of Karachi., Institute for Pure & Applied Mathematics, University of California Los Angeles
Nasir Touheed , Department of Computer Science, IBA, University Of Karachi
pp. 721-724

Gene-gene interaction analysis for the survival phenotype based on the standardized residuals from parametric regression models (Abstract)

Jinseok Oh , Department of Mathematics and Statistics, Sejong University
Min-Seok Kwon , Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea
Taesung Park , Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul 151-747, Korea
Seungyeoun Lee , Department of Mathematics and Statistics, Sejong University
pp. 725-729

Variation in physicochemical properties of the hypervariable region 1 during acute and chronic stages of hepatitis C virus infection (Abstract)

Y. Khudyakov , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
S. Kamili , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
A. Araujo , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
I. V. Astrakhantseva , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
D. S. Campo , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
C-G. Teo , Laboratory Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, USA
pp. 72-78

A randomized, controlled study of efficacy and safety on mild to moderate insomnia intervened by Chinese medicine in the integrated program (Abstract)

Liang Zeng , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Biyun Xu , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Zhaozhang Wei , Liwan hospital of Guangzhou Medical collegname of organization Guangzhou, China
Zehuai Wen , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Yan Li , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Aihua Ou , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Yan Xu , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Peng Liu , New Drug R & D Center of Guangzhou University of traditional Chinese Medicine. Guangzhou, China
Biyang Ou , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Shuhui Chen , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
Ruiyu Xu , Psychology and sleep Dept. Guangdong Provincial Hospital of TCM. Guangzhou, China
pp. 732-739

Liver targeting effect of vinegar-baked Radix Bupleuri on oxymatrine in mice (Abstract)

You-Jun Chen , The 2 Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China
Rui-Zhi Zhao , Guangdong provincial academy of Chinese medicine, Guangzhou, China
Jian-xiong Cai , The 2 Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China
pp. 740-745

A data mining research method based on the concept of evidence based TCM inheritance in famous veteran TCM doctors' personal medical records (Abstract)

Ying-rong Lao , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Yan Li , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Shu-chun Li , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Qiu-zhi Gu , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Zhimin Yang , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Zhao-hui Liang , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
Ding-ying Tan , Guangzhou university of TCM, Guangdong Guangzhou 510405
Yu-peng Fan , Guangzhou university of TCM second College of Clinical Medicine, Guangdong Guangzhou 510120
pp. 746-748

An accuracy comparison between two methods of double data entry in Chinese medicine research (Abstract)

Chuan-jian Lu , Guangdong Provincial Hospital of Traditional Chinese Medicine (2nd Affiliated Hospital of GZUCM, 2nd Clinical College of GZUCM, Guangdong Provincial Academy of Traditional Chinese
Xiao-yan Li , Guangdong Provincial Hospital of Traditional Chinese Medicine (2nd Affiliated Hospital of GZUCM, 2nd Clinical College of GZUCM, Guangdong Provincial Academy of Traditional Chinese
Shao-nan Liu , Guangdong Provincial Hospital of Traditional Chinese Medicine (2nd Affiliated Hospital of GZUCM, 2nd Clinical College of GZUCM, Guangdong Provincial Academy of Traditional Chinese
pp. 749-751

Improvement of Qing Nao Tong Luo recipe on learning and memory impairment in senile dementia rats (Abstract)

Yinzhe Gui , Guangzhou University of Traditional Chinese Medicine, Guangzhou, China, 510006
Zijun Hou , Guangzhou University of Traditional Chinese Medicine, Guangzhou, China, 510006
Jingbo Sun , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, China, 510120
Rong Hua , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, China, 510120
Yan Huang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou, China, 510120
pp. 752-756

Analysis of the indications of empirical prescription in TCM based on association rules (Abstract)

Huang Li , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Huang Chunhua , Neurology Department, Jiangxi Provincial Hospital of Chinese Medicine, Nanchang, China, 330006
Yang XiaoBo , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Weng Heng , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Yang ZhiMin , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Yuan JiaMin , The second clinical college of Guangzhou University of Chinese Medicine, Guangzhou, China, 510405
pp. 757-759

A kernel-decision tree based algorithm for outcome prediction on acupuncture for neck pain: A new method for interim analysis (Abstract)

Wenbin Fu , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Nenggui Xu , Guangzhou University of Chinese Medicine, Guangzhou, China, 510405
Aihua Ou , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Shujun Xu , Guangzhou University of Chinese Medicine, Guangzhou, China, 510405
Gang Zhang , Faculty of Automation, GuangDong University of Technology, Guangzhou, China, 510006
Zhaohui Liang , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Jianqiao Fang , The Third Clinical College of Zhejiang Chinese Medical University, Hangzhou, China, 310005
pp. 760-764

The Traditional Chinese Medicine syndromes of psoriasis in Chinese patients: Contribution of demographic and clinical variables (Abstract)

Aihua Ou , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Zehui He , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Chuanjian Lu , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
pp. 765-768

Classification of lip color based on multiple SVM-RFE (Abstract)

Xiaoqiang Li , School of Computer Engineering and Science, Shanghai University, Shanghai, China
Fufeng Li , Syndrome Laboratory of Traditional Chinese Medicine, Shanghai University of Traditional Chinese Medicine, Shanghai, China
Jingjing Wang , School of Computer Engineering and Science, Shanghai University, Shanghai, China
Huafu Fan , School of Computer Engineering and Science, Shanghai University, Shanghai, China
pp. 769-772

Study on infrared radiation characteristic of heat-sensitive acupoints in bronchial asthma (Abstract)

Ri-Xin Chen , Department of acupuncture and moxibustion, Affiliated Hospital of JiangXi University of Traditional, Chinese Medicine, Nanchang, China
Ning Tian , Department of science and education, Guangdong Hospital of Integrated Traditional and Western Medicine, Foshan, China
Bing Xi , Department of science and education, Guangdong Hospital of Integrated Traditional and Western Medicine, Foshan, China
Bi-Ying Su , Department of science and education, Guangdong Hospital of Integrated Traditional and Western Medicine, Foshan, China
pp. 773-777

Constructing data mining model of five viscera correlation theory of Myasthenia Gravis based on rough set and association rules (Abstract)

Rui Luo , Guangzhou Women and Children's Medical Center Guangzhou, China
Lijuan Li , Guangzhou Women and Children's Medical Center Guangzhou, China
Fengbin Liu , Guangzhou University of Traditional Chinese Medicine, Guangzhou, China
Zhengkun Hou , Guangzhou University of Traditional Chinese Medicine, Guangzhou, China
pp. 778-783

Application of data mining technology in excavating prevention and treatment experience of infectious diseases from famous herbalist doctors (Abstract)

Ai-hua Ou , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Yun-Tao Liu , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Ji-Qiang Li , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Zhan-Peng Tan , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Yi Luo , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Jian Yin , School of Information Science and Technology, Sun Yat-sen University Guangzhou, China
Hong Zhou , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Dan-Wen Zheng , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
Qing-Ping Deng , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China
pp. 784-790

YinYang bipolar atom and quantum cellular automation -- A unification (Abstract)

Wen-Ran Zhang , Dept. of Computer Science, Georgia Southern University, Statesboro, GA USA
pp. 791-797

Lifted wavelet transforms with application to human pulse identification (Abstract)

Long Wan , College of Communication Engineering, Chongqing University, Chongqing, China
Kunbao Cai , College of Communication Engineering, Chongqing University, Chongqing, China
Decheng Luo , Rehabilitation Center for Drug Dependence, Chongqing Mental Hospital, Chongqing, China
pp. 798-802

Assessments of intra- and inter-host diversity of hepatitis C virus using Next Generation Sequencing and Mass spectrometry (Abstract)

Z. Dimitrova , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
P. Skums , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
S. Ramachandran , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
G. Xia , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
Y. Lin , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
D. S. Campo , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
J. C. Forbi , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
Y. Khudyakov , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
L. Ganova-Raeva , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
G. Vaughan , Laboratoty Branch, Division of Viral Hepatitis, Center for Disease Control and Prevention, Atlanta, GA, USA
B. Pearlman , Center for Hepatitis C, Atlanta Medical Center, Atlanta, Georgia, USA
pp. 79-86

A preliminarily analysis of TCM-syndrome distribution of ectopic pregnancy surgery inpatients (Abstract)

Ai-hua Ou , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
Hao Chen , Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510006 China
Yan-xin Chen , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
Qing-qing Zhou , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
Zhi-qiang Chen , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
Xiao-dan Li , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
Li-xing Cao , The second affiliated hospital of Guangzhou University of Chinese Medicine, Guangdong, Guangzhou 510120 China
pp. 803-806

Effects of Yinxieling-optimization-decoction in treating psoriasis in mouse psoriasis models (Abstract)

Zhao RuiZhi , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Han Ling , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Yu JingHong , Guangdong provincial academy of Chinese medicine, Guangzhou China, 510006
Lu ChuanJian , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Lou BuQing , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
pp. 807-810

Exploring the biological basis of deficiency pattern in rheumatoid arthritis through text mining (Abstract)

Cheng Lu , Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Dongzhimen, Beijing, 100700, China
Aiping Lu , Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Dongzhimen, Beijing, 100700, China
Junping Zhan , Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Dongzhimen, Beijing, 100700, China
Guang Zheng , School of Information Science-Engineering, Lanzhou University, Lanzhou, 730000, China
Miao Jiang , Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Dongzhimen, Beijing, 100700, China
Hongtao Guo , Institute of Basic Research in Clinical Medicine, China Academy of Chinese Medical Sciences, Dongzhimen, Beijing, 100700, China
pp. 811-816

Diagnosis based on decision tree and discrimination analysis for chronic hepatitis b in TCM (Abstract)

Lizhuang Ma , Department of Computer Science & Engineering, and Shanghai Research Institute of Chinese Medicine, Shanghai Jiaotong University, and Shanghai University of TCM, Shanghai, C
Na Chu , Department of Computer Science & Engineering, and Shanghai Research Institute of Chinese Medicine, Shanghai Jiaotong University, and Shanghai University of TCM, Shanghai, C
Xiaoyu Chen , Center of Traditional Chinese Medicine Information, Science and Technology, Shanghai University of TCM, Shanghai, China
Yiyang Hu , Department of Computer Science & Engineering, and Shanghai Research Institute of Chinese Medicine, Shanghai Jiaotong University, and Shanghai University of TCM, Shanghai, C
pp. 817-822

Construction of semantic analysis system for Traditional Chinese Medicine unstructured medical records (Abstract)

Chen Dacan , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Fu Haoyang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Li Yang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Weng Heng , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Zeng Yuping , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Lin Yingzi , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Yi Chuanliang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
Wu Siliang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou China, 510120
pp. 823-828

A clinical outcome evaluation model with local sample selection: A study on efficacy of acupuncture for cervical spondylosis (Abstract)

Gang Zhang , Faculty of Automation, GuangDong University of Technology, Guangzhou, China, 510006
Wen-Bin Fu , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Zhong Di , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Zhao-Hui Liang , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Hong-Lai Zhang , School of Information Technology, Guangzhou University of Chinese Medicine, China, 510405
Li Jiang , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Jian-Hua Liu , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
pp. 829-833

TCM syndromes diagnostic model of hypertension: Study based on Tree Augmented Naive Bayes (Abstract)

Xiao-zhong Lin , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
Jia-min Yuan , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
Yi Ren , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
Yun-tao Liu , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
Yi Luo , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
Wen-wei Ouyang , Guangdong Provincial Hospital of Traditional Chinese Medicine, Guangzhou (510120), China
pp. 834-837

Analysis of functional status of Meridians in different types of TCM constitution (Abstract)

Lei Guo , The Second Medical College of Guangzhou University of TCM, Guangzhou, China
Zhi-min Yang , The Second Affiliated Hospital of Guangzhou University of TCM, Guangzhou, China
Zi-jian Wu , The Second Medical College of Guangzhou University of TCM, Guangzhou, China
Ai-hua Ou , The Second Affiliated Hospital of Guangzhou University of TCM, Guangzhou, China
Zi-yi Ye , The Second Affiliated Hospital of Guangzhou University of TCM, Guangzhou, China
Yan-zhao Lin , The Second Affiliated Hospital of Guangzhou University of TCM, Guangzhou, China
pp. 838-842

Ensemble learning for synthesis of the four diagnostics of TCM (Abstract)

Xiaoyu Chen , Center of Traditional Chinese Medicine Information, Science and Technology, and Shanghai Research, Institute of Chinese Medicine, Shanghai University of T.C.M., Shanghai, China
Zhiying Che , Center of Traditional Chinese Medicine Information, Science and Technology, and Shanghai Research, Institute of Chinese Medicine, Shanghai University of T.C.M., Shanghai, China
Yiyang Hu , Center of Traditional Chinese Medicine Information, Science and Technology, and Shanghai Research, Institute of Chinese Medicine, Shanghai University of T.C.M., Shanghai, China
Na Chu , Department of Computer Science & Engineering, Shanghai Jiaotong University, Shanghai, China
Lizhuang Ma , Department of Computer Science & Engineering, Shanghai Jiaotong University, Shanghai, China
pp. 843-847

Biclustering binary data and its application in traditional Chinese Medicine (Abstract)

Zhoujin Pan , Department of Computer Science, Yangzhou University, Yangzhou 225009, China
Lin Chen , Department of Computer Science, Yangzhou University, Yangzhou 225009, China
Ping He , Department of Computer Science, Yangzhou University, Yangzhou 225009, China
Xiaohua Xu , Department of Computer Science, Yangzhou University, Yangzhou 225009, China
Lin Lu , Department of Computer Science, Yangzhou University, Yangzhou 225009, China
pp. 848-853

Balance-bagging-PRFS algorithm for feature optimization on insomnia data intervened by traditional Chinese Medicine (Abstract)

Xiao-bo Yang , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
Shi-xing Yan , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Xin-feng Guo , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
Zheng-yang Zhou , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Guo-zheng Li , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Yan Li , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
pp. 854-857

Balance-bagging-PRFS algorithm for feature optimization on insomnia data intervened by traditional Chinese Medicine (Abstract)

Xiao-bo Yang , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
Shi-xing Yan , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Zheng-yang Zhou , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Guo-zheng Li , College of Electronics & Information Engineering, Tongji University, Shanghai, China
Yan Li , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
Xin-feng Guo , The 2nd Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
pp. 854-857
Papers

The model of high-order multidimensional tree with tristate applied to the digitalization of Yin-Yang theory of Traditional Chinese Medicine (Abstract)

Zhiwei Liang , Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, CN
Xiaoping Lai , Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, CN
Yongyun Wang , Dongguan Mathematical Engineering Academy of Chinese Medicine and Guangzhou University of TCM, Dongguan, Guangdong, CN
Zuye Liang , Dongguan Mathematical Engineering Academy of Chinese Medicine and Guangzhou University of TCM, Dongguan, Guangdong, CN
Yanhua Li , Dongguan Mathematical Engineering Academy of Chinese Medicine and Guangzhou University of TCM, Dongguan, Guangdong, CN
Lingli Wang , Guangzhou University of Traditional Chinese Medicine, Guangzhou, Guangdong, CN
Zhiwei Liang , Dongguan Mathematical Engineering Academy of Chinese Medicine and Guangzhou University of TCM, Dongguan, Guangdong, CN
pp. 862-867

Analysis of herbal formulation in TCM: Infertility as a case study (Abstract)

Kei Fan , University of Sydney, Sydney, Australia
Zhou Xuezhong , Beijing Jiaotong University, Beijing, China
Paul Kwan , University of New England, Armidale, Australia
Kelvin Chan , University of Sydney, Sydney, Australia
Simon K. Poon , University of Sydney, Sydney, Australia
Clement Loy , University of Sydney, Sydney, Australia
Zhang, Yinghui Runshun , Wang, Jinghong Xie, Baoyan Liu, China Academy of Chinese, Medical Sciences, Beijing, China
Josiah Poon , University of Sydney, Sydney, Australia
Daniel Sze , Hong Kong Polytechnic, University, Hong Kong
Junbin Gao , Charles Sturt University Australia
pp. 868-872

Research on data mining methods for organoleptic determination of Amomum villosum product (Abstract)

He Rui , Research Centre of Chinese Herbal, Resource Science and Engineering, Guangzhou University of Chinese Medicine, Guangzhou 510006, China
Zhan Ruo-Ting , Research Centre of Chinese Herbal, Resource Science and Engineering, Guangzhou University of Chinese Medicine, Guangzhou 510006, China
Yu Chao-fan , Institute of Information Technology, Guangzhou University of Chinese Medicine, Guangzhou 510006, PR China
Zhao Wen-Guang , Institute of Information Technology, Guangzhou University of Chinese Medicine, Guangzhou 510006, PR China
pp. 873-880

CONDEX: Copy number detection in exome sequences (Abstract)

Mariann Micsinai , NYU Cancer Institute, New York University School of Medicine, 530 First Avenue, New York, NY 10016, USA
Itsik Pe'er , Department of Computer Science, Columbia University, 1214 Amsterdam Avenue, New York, NY 10025, USA
Arthi Ramachandran , Department of Computer Science, Columbia University, 1214 Amsterdam Avenue, New York, NY 10025, USA
pp. 87-93

Research on the clinical classification of Xi clan diabetic foot using fuzzy C-means clustering method (Abstract)

Xu HongTao , Shanghai Traditional Chinese Medicine-integrated Hospital, Shanghai 200082, China
Xi Jiuyi , Shanghai Traditional Chinese Medicine-integrated Hospital, Shanghai 200082, China
Zhang Haowei , School of Medical Instrument and Food Engineering, University of Shanghai for Science and Technology Shanghai 200093, China
Cao Yemin , Shanghai Traditional Chinese Medicine-integrated Hospital, Shanghai 200082, China
Zhu Xunsheng , Bio-manufacturing research center Soochow University Suzhou 215006, China
Gu Zheng , Institute of Information Technology Nanjing Univ. of Chinese Medicine Nanjing 210029, China
pp. 881-885

Research on temperature field in simulated living-porcine liver tissue irradiated by laser (Abstract)

Cao Yemin , Shanghai Traditional Chinese Medicine-integrated Hospital, Shanghai 200082, China
Deng Qilin , School of Mchanical & Power Engineering, Shanghai Jiaotong University, Shanghai 200240, China
Zhang Jiafu , Massage Deparetment, Shanghai First People's Hospital, Shanghai 200080, China
Gu Zheng , Institute of Information Technology Nanjing Univ. of Chinese Medicine Nanjing 210029, China
Wang Qunchao , School of Mchanical & Power Engineering, Shanghai Jiaotong University, Shanghai 200240, China
Yuan Jie , Massage Deparetment, Shanghai First People's Hospital, Shanghai 200080, China
Zhu Xunsheng , Bio-manufacturing research center Soochow University Suzhou 215006, China
pp. 886-889

Co-evolutionary genetic algorithm in symptom-herb relationship discovery (Abstract)

Baoyan Liu , China Academy of Chinese Medical Sciences, Beijing, China
Runshun Zhang , China Academy of Chinese Medical Sciences, Beijing, China
Xuezhong Zhou , Beijing Jiaotong, University Beijing, China
Daniel Sze , Hong Kong, Polytechnic University, Hong Kong
Josiah Poon , University of Sydney, Sydney, Australia
Simon Poon , University of Sydney, Sydney, Australia
Dawei Yin , University of Sydney, Sydney, Australia
pp. 890-894

Pressure ulcer monitoring and intervention: A software platform (Abstract)

M. Farshbaf , Quality of Life Technology Laboratory, The University of Texas at Dallas, Richardson, TX 75080
R. Yousefi , Quality of Life Technology Laboratory, The University of Texas at Dallas, Richardson, TX 75080
M. Nourani , Quality of Life Technology Laboratory, The University of Texas at Dallas, Richardson, TX 75080
M. Pompeo , Presbyterian Wound Care Clinic, 4500 S Lancaster Road, Dallas, TX 75231
S. Ostadabbas , Quality of Life Technology Laboratory, The University of Texas at Dallas, Richardson, TX 75080
pp. 897-898

BioDB: Integration of biological knowledgebases (Abstract)

Ahmet Sacan , Drexel University, School of Biomedical Engineering and Health Systems, Philadelphia, USA
Jacqueline Gerhart , Drexel University, School of Biomedical Engineering and Health Systems, Philadelphia, USA
pp. 899

System dynamics modeling of childhood obesity (Abstract)

Behrouz Madahian , University of Memphis, Memphis, TN 38152
Lisa Klesges , University of Memphis, Memphis, TN 38152
Ramin Homayouni , University of Memphis, Memphis, TN 38152
pp. 900

Using unified famous objects (UFO) to automate Alzheimer's disease diagnostics (Abstract)

Michael Gubanov , Department of Computer Science & Engineering, University of Washington, Seattle, USA
Linda Shapiro , Department of Computer Science & Engineering, University of Washington, Seattle, USA
pp. 901-903

Bio-signal procssor platform system for array sensors (Abstract)

Jusung Park , Dept. of Electronic engineering, Pusan National University, Busan, Korea
Jingzhe Xu , Dept. of Electronic engineering, Pusan National University, Busan, Korea
Donghoon Lee , Dept. of Electronic engineering, Pusan National University, Busan, Korea
Youngju Park , Dept. of Electronic engineering, Pusan National University, Busan, Korea
Seungpyo Jung , Dept. of Electronic engineering, Pusan National University, Busan, Korea
pp. 904-906

Domain-domain interactions in obligate and non-obligate protein-protein interactions (Abstract)

Mina Maleki , School of Computer Science, University of Windsor 401 Sunset Ave., Windsor, ON, N9B 3P4, Canada
Luis Rueda , School of Computer Science, University of Windsor 401 Sunset Ave., Windsor, ON, N9B 3P4, Canada
pp. 907-908

Optimization of turn-back primers in isothermal amplification (Abstract)

Michiel J. L. de Hoon , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Erik Arner , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Shintaro Aoki , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Yuri Ishizu , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Yoshihide Hayashizaki , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Yuki Kawai , Division for Molecular & Genetic Testing, K.K. Dnaform, Yokohama, Japan
Carsten O. Daub , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Alexander Lezhava , Omics Science Center (OSC) RIKEN, Yokohama, Japan
Yasushi Kogo , Division for Molecular & Genetic Testing, K.K. Dnaform, Yokohama, Japan
Yasumasa Kimura , Omics Science Center (OSC) RIKEN, Yokohama, Japan
pp. 909-911

Medicago truncatula gene regulatory network prediction server (Abstract)

Yinbeing Ge , Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA
Ji He , Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA
Mingyi Wang , Department of Scientific Computing, The Samuel Roberts Noble Foundation, Inc., Ardmore, Oklahoma, USA
pp. 912-914

Modular neural network model based foetal state classification (Abstract)

Sanjay Nalbalwar , Department of Electronics & Telecommunications Engineering, Dr. Babasaheb Ambedkar Technological University Lonere India
Ashok Ghatol , Technical Director, Dr. D. Y. Patil Group of Institutions, Akurdi Pune, India
Shivajirao Jadhav , Department of Information Technology, Dr. Babasaheb Ambedkar Technological University Lonere India
pp. 915-917

Improved compression ratio for model-based ECG compression using differential coding (Abstract)

Zahra Passand , Department of Biomedical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
Mahdi Azarnoosh , Department of Biomedical Engineering, Mashhad Branch, Islamic Azad University, Mashhad, Iran
pp. 918

A comparative study of text classification approaches for personalized retrieval in PubMed (Abstract)

Cen Li , Dept of Computer Science, Middle Tenn State Uni.
Suk Seo , Dept of Computer Science, Middle Tenn State Uni.
Sachintha Pitigala , Dept of Computer Science, Middle Tenn State Uni.
pp. 919-921

Generative/discriminative models for nucleosome positioning (Abstract)

Xiuwen Liu , Department of Computer Science, Florida State University, Tallahassee, USA
Yu Zhang , Department of Computer Science, Florida State University, Tallahassee, USA
pp. 922-924

Adaptive multi-scaled simulation algorithm for biochemical reaction in complex systems (Abstract)

Lin Ji , Department of Statistics, Rice University; Department of Chemistry, Capital Normal University
Dennis Cox , Department of Statistics, Rice University
Jesse Turner , Department of Computational and Applied, Mathematics, Rice University
pp. 925-927

Analysis of the indications of empirical prescription in TCM based on association rules (Abstract)

Yang XiaoBo , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Weng Heng , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Yang ZhiMin , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
Huang Chunhua , Neurology Department, Jiangxi Provincial Hospital of Chinese Medicine, Nanchang, China, 330006
Yuan JiaMin , The second clinical college of Guangzhou University of Chinese Medicine, Guangzhou, China, 510405
Huang Li , Guangdong Provincial Hospital of Chinese Medicine, Guangzhou, China, 510120
pp. 928

Implications of observation-fact modifiers to i2b2 ontologies (Abstract)

Devjani Chatterjee , Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA
Jack W. London , Kimmel Cancer Center, Thomas Jefferson University, Philadelphia PA
pp. 929-930

Detection of paroxysmal atrial fibrillation subjects based on circadian rhythm parameters of heart rate variability (Abstract)

Aditi Olemann , Department of Electronics and Electrical Engineering, Indian Institute of Technology, Guwahati, Guwahati, India
Desok Kim , Department of Electrical Engineering, KAIST, Daejeon, Republic of Korea
pp. 931-934

Joint analysis of host and pathogen genomes (Abstract)

Viktor Muller , Institute of Biology, Eötvös Loránd University, Budapest, Hungary
Amalio Telenti , Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland
Istvan Bartha , Institute of Microbiology, Univ of Lausanne, Lausanne, Switzerland
Jacques Fellay , École Polytechnique Fédérals de Lausanne, Lausanne, Switzerland
pp. 935

Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome (Abstract)

W. Jim Zheng , Bioinformatics Division, Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC
Jijun Tang , Department of Computer Science Engineering, University of South Carolina, Columbia, SC
William Arndt , Bioinformatics Division, Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC
Matt Mitman , Department of Computer Science Engineering, University of South Carolina, Columbia, SC
Thomas M. Asbury , Bioinformatics Division, Department of Biochemistry and Molecular Biology, Medical University of South Carolina, Charleston, SC
pp. 936-938

Function prediction for in silico protein mutagenesis using transduction and active learning (Abstract)

Harry Wechsler , Department of Computer Science, George Mason University, Fairfax, Virginia, USA
Nada Basit , Department of Computer Science, George Mason University, Fairfax, Virginia, USA
pp. 939-940

A computer aided for image processing of computed tomography in hepatocellular carcinoma (Abstract)

Yi-Hsien Lin , Division of Radiotherapy, Cheng Hsin General Hospital, Taipei, Taiwan
Wei-Tai Hsu , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Jia-Rong Yeh , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Yi-Chung Chang , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Men-Tzung Lo , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
pp. 942-944

Application of stochastic resonance for imaging enhancement of computed tomography in hepatocellular carcinoma (Abstract)

Yi-Hsien Lin , Division of Radiotherapy, Cheng Hsin General Hospital, Taipei, Taiwan
Yi-Chung Chang , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Wei-Tai Hsu , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Men-Tzung Lo , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
Jia-Rong Yeh , Research Center for Adaptive Data Analysis & Center for Dynamical Biomarkers and Translational Medicine, National Central University, Chungli, Taiwan
pp. 945-947

Gene expression regulation during differentiation from murine ES cells due to microRNA (Abstract)

Masato Yoshizawa , Department of Physics, Chuo University, Tokyo, Japan
Y-h Taguchi , Department of Physics, Chuo University, Tokyo, Japan
pp. 948-949

Viral quasispecies reconstruction from amplicon 454 pyrosequencing reads (Abstract)

Alex Zelikovsky , Department of Computer Science, Georgia State University Atlanta, Georgia 30302-3994
Bassam Tork , Department of Computer Science, Georgia State University Atlanta, Georgia 30302-3994
Ion Mandoiu , Department of Computer Science & Engineering, University of Connecticut, Storrs, CT 06269
Pavel Skums , Centers for Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, Georgia 30322
Nicholas Mancuso , Department of Computer Science, Georgia State University Atlanta, Georgia 30302-3994
pp. 94-101

Protein binding prediction using non-metric multidimensional scaling method (Abstract)

Y-h. Taguchi , Department of Physics, Chuo University, Tokyo, Japan
Hiromu Mogi , Department of Physics, Chuo University, Tokyo, Japan
pp. 950-952

Protein binding prediction using non-metric multidimensional scaling method (Abstract)

Hiromu Mogi , Department of Physics, Chuo University, Tokyo, Japan
Y.-h. Taguchi , Department of Physics, Chuo University, Tokyo, Japan
pp. 950-952
Papers

Clinical network for case based reasoning methodology (Abstract)

Eun-Soo Jang , Division of Constitutional Medicine Research, Korea Institute of Oriental Medicine, Daejeon, Korea
Si-Woo Lee , Division of Constitutional Medicine Research, Korea Institute of Oriental Medicine, Daejeon, Korea
Hee-Jeong Jin , Division of Constitutional Medicine Research, Korea Institute of Oriental Medicine, Daejeon, Korea
pp. 956-957

Identification of CpG islands in DNA sequences using supervised classification (Abstract)

Ajit S. Bopardikar , Samsung Advanced Institute of Technology India, Samsung India Software Operations, Bangalore, India
B. S. Raghavendra , Samsung Advanced Institute of Technology India, Samsung India Software Operations, Bangalore, India
pp. 958-960

Principal component analysis for bacterial proteomic analysis (Abstract)

Akira Okamoto , Graduate School of Medicine, Nagoya University, Nagoya, Japan
Y-h. Taguchi , Department of Physics, Chuo University, Tokyo, Japan
pp. 961-963

Feature extraction for discriminance of symbiotic/parasitic bacterial type III effector protein using principal component analysis (Abstract)

Y-h. Taguchi , Department of Physics, Chuo University, Tokyo, Japan
Yuichi Nakano , Department of Physics, Chuo University, Tokyo, Japan
pp. 964-965

Magnetic resonance angiography study of a normal mouse brain for creating a three-dimensional cerebral vasculature atlas and software for labeling vessels (Abstract)

Nathan Yanasak , CIFSA & Dept of Radiology, Georgia Health Sciences University, Augusta, Ga, USA
Rajeshree Joshi , CIFSA, Georgia Health Sciences University, Augusta, Ga, USA
pp. 966-968

Integration of statistical models and visualization tools to characterize microRNA networks influencing cancer (Abstract)

Kristin R. Delfino , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
Sandra L. Rodriguez-Zas , Department of Animal Sciences, Department of Statistics, Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
pp. 969-971

Analysis of uterine contraction signals (Abstract)

Kemal Aydin , Computer Science Department, University of Arkansas at Pine Bluff, Pine Bluff, USA
pp. 972

Interaction simulation of Lipoxygenase with arachidonate acid using NAMD (Abstract)

Shuju Bai , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
Ebrahim Khosravi , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
Zhongwei Li , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
pp. 973

Docking arachidonic acid into human 5/12-lipoxygenase using ICM (Abstract)

Shuju Bai , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
Mingmin Bai , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
Ebrahim Khosravi , Depatrment of Computer Science, Southern University, Baton Rouge, LA 70813
pp. 974

Additive and multiplicative genome-wide association models identify genes associated with growth (Abstract)

Sandra L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Nicola Serao , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Gustavo Caetano-Anolles , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Maria B. Villamil , Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Cynthia Zavala , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 975-977

Hierarchical modeling of alternative exon usage associations with survival (Abstract)

Sandra L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Bruce R Southey , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Nicola V. L. Serao , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Zeeshan Fazal , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Ahmed Sadeque , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 978-980

An approach to phylogenomic analysis of bacterial pathogens (Abstract)

David J. Lipman , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Vyacheslav Chetvernin , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
William Klimke , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Boris Fedorov , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Igor Tolstoy , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Dmitry Dernovoy , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Alexandre Souvorov , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Tatiana Tatusova , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
Leonid Zaslavsky , National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894
pp. 981

Comparison of tandem mass spectrometry search methods to identify neuropeptides (Abstract)

B. R. Southey , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
K. I. Porter , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
M. N. Akhtar , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
S. L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
J. V. Sweedler , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 982-984

Integration of polygenic and individual SNP effects in genome-wide association analyses (Abstract)

N.V.L. Serao , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
J.E. Beever , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
D.B. Faulkner , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
S.L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 985-987

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome (Abstract)

Malik N. Akhtar , Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
Jonathan V. Sweedler , Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
Bruce R. Southey , Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
Kenneth I. Porter , Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
Sandra L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, USA
pp. 988-990

Assembly of low-energy protein conformations with heterogeneous fragments (Abstract)

Amarda Shehu , Department of Computer Science, George Mason University, Fairfax, Virginia 22030 USA
Kevin Molloy , Department of Computer Science, George Mason University, Fairfax, Virginia 22030 USA
pp. 991-993

Model of ion intensity from tandem mass spectra for improved peptide identification and simulation (Abstract)

A. Sadeque , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
Z. Fazal , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
J. V. Sweedler , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
S. L. Rodriguez-Zas , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
B. R. Southey , Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, USA
pp. 994-996

Genetic information for chronic disease prediction (Abstract)

Vlad Korolev , Department of Computer Science and EE, University of Maryland Baltimore County, Baltimore, MD 21250
Yelena Yesha , Department of Computer Science and EE, University of Maryland Baltimore County, Baltimore, MD 21250
Michael A. Grasso , Department of Emergency Medicine, University of Maryland School of Medicine, Baltimore, MD 21201
Darshana Dalvi , Department of Computer Science and EE, University of Maryland Baltimore County, Baltimore, MD 21250
Soma Das , Department of Computer Science and EE, University of Maryland Baltimore County, Baltimore, MD 21250
Matthew Gately , Department of Computer Science and EE, University of Maryland Baltimore County, Baltimore, MD 21250
pp. 997

An accurate and reliable method for automatic picking of HIV/SIV spikes (Abstract)

Kenneth H. Roux , Florida State University, Tallahassee, FL 32306
Xiuwen Liu , Florida State University, Tallahassee, FL 32306
Chaity B. Mukherjee , Florida State University, Tallahassee, FL 32306
Moumita Dutta , Florida State University, Tallahassee, FL 32306
Hanspeter Winkler , Florida State University, Tallahassee, FL 32306
Kenneth A. Taylor , Florida State University, Tallahassee, FL 32306
pp. 998-1000

Author index (PDF)

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