The Community for Technology Leaders
13th IEEE International Conference on BioInformatics and BioEngineering (2004)
Taichung, Taiwan, ROC
May 19, 2004 to May 21, 2004
ISBN: 0-7695-2173-8
TABLE OF CONTENTS
Keynote Speech
Invited Speech

Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102 (PDF)

Ying Xu , University of Georgia at Athens
PhuongAn Dam , University of Georgia at Athens
Zhengchang Su , University of Georgia at Athens
Victor Olman , University of Georgia at Athens
pp. 5
Session A1: Bioengineering

A New Dual Channel Pulse Wave Velocity Measurement System (Abstract)

Wei-Chuan Tsai , National Cheng Kung University Medical Center
Chih-Kai Chi , Southern Taiwan University of Technology
Yung-Kang Chen , Southern Taiwan University of Technology
Ming-Chun Wang , National Cheng Kung University Medical Center
Ju-Yi Chen , National Cheng Kung University Medical Center
Hsien-Tsai Wu , Southern Taiwan University of Technology
pp. 17

Techniques for Enhancing Computation of DNA Curvature Molecules (Abstract)

Enrico Macii , Politecnico di Torino, Italy
Elisa Ficarra , Politecnico di Torino, Italy
Luca Benini , University of Bologna, Italy
Daniele Masotti , Politecnico di Torino, Italy
pp. 22

Design of Microfabricated Strain Gauge Array to Monitor Bone Deformation In Vitro and In Vivo (Abstract)

Vasudev J. Bailey , University of California at Irvine
Gisela Lin , University of California at Irvine
Joyce H. Keyak , University of California at Irvine; College of Medicine
Gloria Y. Yang , University of California at Irvine
William C. Tang , University of California at Irvine
pp. 30

Towards Automating an Interventional Radiology Procedure (Abstract)

I. Volkov , Institute for Infocomm Research, Singapore
M. Ang, Jr. , National University of Singapore
W. L. Nowinski , Institute for Infocomm Research, Singapore
F. S. Chau , National University of Singapore
W. Zheng , Institute for Infocomm Research, Singapore
X. Ma , Institute for Infocomm Research, Singapore
A. Aziz , Institute for Infocomm Research, Singapore
pp. 38
Session B1: Data Integration and Protein Folding

A Service Discovery Approach in Support of Web Service Integration (Abstract)

Yue He , Indiana University Purdue University Indianapolis
Bukhres A. Omran , Indiana University Purdue University Indianapolis
Malika Mahoui , Indiana University Purdue University Indianapolis
Zina Ben Miled , Indiana University Purdue University Indianapolis
Lingma Lu , Indiana University Purdue University Indianapolis
Jessica Chen , Indiana University Purdue University Indianapolis
Ning Gao , Indiana University Purdue University Indianapolis
pp. 65

Reducing the Computational Load of Energy Evaluations for Protein Folding (Abstract)

Eugene Santos, Jr. , University of Connecticut, Storrs
Eunice E. Santos , Virginia Polytechnic Institute & State University
pp. 79
Invited Speech

An Iterative Relaxation Technique for the NMR Backbone Assignment Problem (PDF)

J. M. Chang , Academia Sinica, Taipei, Taiwan
C. F. Chang , Academia Sinica, Taipei, Taiwan
W. J. Wu , Academia Sinica, Taipei, Taiwan
W. L. Hsu , Academia Sinica, Taipei, Taiwan
W. C. Chou , Academia Sinica, Taipei, Taiwan
K. P. Wu , Academia Sinica, Taipei, Taiwan
J. B. Chen , Academia Sinica, Taipei, Taiwan
T. Y. Sung , Academia Sinica, Taipei, Taiwan
T. H. Huang , Academia Sinica, Taipei, Taiwan
pp. 89
Session A2: Medical Image Processing I

Knowledge-Driven Extraction of the Four Modified Talairach Cortical Landmarks (A, P, L, and R) from MR Neuroimages (Abstract)

Wieslaw L. Nowinski , Institute for Infocomm Research, Singapore
Qingmao Hu , Institute for Infocomm Research, Singapore
pp. 93

Breast Ultrasound Image Classification Using Fractal Analysis (Abstract)

Ming-Feng Ho , National Chung Cheng University, Chiayi, Taiwan
Dar-Ren Chen , China Medical University and Hospital, Taichung, Taiwan
Chii-Jen Chen , National Chung Cheng University, Chiayi, Taiwan
Woo Kyung Moon , Seoul National University Hospital, Korea
Ruey-Feng Chang , National Chung Cheng University, Chiayi, Taiwan
pp. 100

Quantitative Computer Image Analysis of Serum α-fetoprotein Rapid Gold Immunochromatographic Dipstick Assay (Abstract)

I-Chang Jou , National Kaohsiung First University of Science and Technology, Taiwan
Shiang-Bin Jong , Kaohsiung Medical University, Taiwan
Jeng-Yang Hwang , ASN Technology Corp., Taiwan
Hen-Chang Chang , ASN Technology Corp., Taiwan
Louise Chuang , National Cheng Kung University, Tainan, Taiwan
pp. 108

Segmentation of the Sylvian Fissure in Brain Mr Images (Abstract)

Wenlong Qian , Institue for Infocomm Research, Singapore; National University of Singapore, Singapore
Wieslaw L. Nowinski , Institue for Infocomm Research, Singapore
Qingmao Hu , Institue for Infocomm Research, Singapore
Zujun Hou , Institue for Infocomm Research, Singapore
Aziz Aamer , Institue for Infocomm Research, Singapore
pp. 115
Session B2: Parallel Processing and Primer Design

Fast Parallel Molecular Algorithms for DNA-based Computation: Factoring Integers (Abstract)

Michael (Shan-Hui) Ho , Southern Taiwan University of Technology, Taiwan
Weng-Long Chang , Southern Taiwan University of Technology, Taiwan
Minyi Guo , The University of Aizu, Aizu-Wakamatsu City, Japan
pp. 125

An Effective Approach for Constructing the Phylogenetic Tree on a Grid-Based Architecture (Abstract)

Che-Hao Wu , National Chung Cheng University, Chiayi, Taiwan
Damon Shing-Min Liu , National Chung Cheng University, Chiayi, Taiwan
pp. 134

Using Distributed Computing Platform to Solve High Computing and Huge Data Processing Problems in Bioinformatics (Abstract)

Rong-Ming Chen , Taichung Healthcare and Management University, Taiwan
Chih-Wei Huang , Taichung Healthcare and Management University, Taiwan
Shih-Nung Chen , Taichung Healthcare and Management University, Taiwan
Raymond C. K. Lin , Taichung Healthcare and Management University, Taiwan
Jeffrey J. P. Tsai , Taichung Healthcare and Management University, Taiwan; University of Illinois, Chicago
pp. 142

Design of Specie-Specific Primers for Virus Diagnosis in Plants with PCR (Abstract)

L. Gon?alves , Universidade Federal do Rio Grande do Norte, Brazil
K. Rocha , Universidade Federal do Rio Grande do Norte, Brazil
P. Marinho , Universidade Federal do Rio Grande do Norte, Brazil
M. Monteiro , Universidade Federal do Rio Grande do Norte, Brazil
C. Medeiros , Universidade Federal do Rio Grande do Norte, Brazil
pp. 149
Session A3: Medical Image Processing II

Interactive Polyp Biopsy based on Automatic Segmentation of Virtual Colonoscopy (Abstract)

Jyh-Wei Jang , National Chia-Yi University, R.O.C.
Chien-Chuan Ko , National Chia-Yi University, R.O.C.
pp. 159

Semantic Integration and Knowledge Exchange for Diagnostic Medical Image Databases (Abstract)

Yash Sethi , University of Missouri, Columbia
Chi-Ren Shyu , University of Missouri, Columbia
Adrian S. Barb , University of Missouri, Columbia
pp. 175

Discrimination between Alzheimer's Dementia and Controls by Automated Analysis of Statistical Parametric Maps of {99m}Tc-HMPAO-SPECT Volumes (Abstract)

Tang-Kai Yin , Chia-Nan University of Pharmacy and Science, Tainan, Taiwan, R.O.C.
Nan-Tsing Chiu , National Cheng Kung University, Tainan, Taiwan, R.O.C.
pp. 183

Quantitation of Extra-Capsular Prostate Tissue from Reconstructed Tissue Images (Abstract)

Frederic (Rick) McKenzie , Old Dominion University, Norfolk, VA
Jose Diaz , Eastern Virginia Medical School, Norfolk, VA
Rania Hussein , Old Dominion University, Norfolk, VA
Paul Schellhammer , Eastern Virginia Medical School, Norfolk, VA
pp. 191
Session B3: Medical Informatics

GeneWebEx: Gene Annotation Web Extraction, Aggregation, and Updating from Web-Based Biomolecular Databanks (Abstract)

Francesco Pinciroli , Politecnico di Milano, Italy; MultiMedica Hospitals, Milano, Italy
Andrea Stella , Politecnico di Milano, Italy
Natalia Meani , IEO - European Institute of Oncology, Milano, Italy; IFOM - FIRC Institute of Molecular Oncology, Milano, Italy
Marco Masseroli , Politecnico di Milano, Italy; MultiMedica Hospitals, Milano, Italy
Myriam Alcalay , IEO - European Institute of Oncology, Milano, Italy; IFOM - FIRC Institute of Molecular Oncology, Milano, Italy
pp. 199

Biomedical Ontologies in Post-Genomic Information Systems (Abstract)

D. P?rez-Rey , Polytechnic University of Madrid, Spain
M. Garc?a-Remesal , Polytechnic University of Madrid, Spain
R. Alonso-Calvo , Polytechnic University of Madrid, Spain
V. Maojo , Polytechnic University of Madrid, Spain
pp. 207

European Support to Biomedical Informatics Development: in Pursue of Genomic Medicine (Abstract)

Julio Bonis , Municipal Institute of Medical Research - IMIM, Barcelona, Spain
Fernando Martin-Sanchez , Bioinformatics Unit, Institute of Health Carlos III, Majadahonda, Madrid, Spain
Ferran Sanz , Municipal Institute of Medical Research - IMIM, Barcelona, Spain
Carlos D?az , Municipal Institute of Medical Research - IMIM, Barcelona, Spain
pp. 215

INBIOMED: a Platform for the Integration and Sharing of Genetic, Clinical and Epidemiological Data Oriented to Biomedical Research (Abstract)

J. P. Sanchez , Medical Bioinformatics Unit, Institute of Health Carlos III, Ctra. Majadahonda a Pozuelo, Madrid, Spain
V. L?pez-Alonso , Medical Bioinformatics Unit, Institute of Health Carlos III, Ctra. Majadahonda a Pozuelo, Madrid, Spain
I. Liebana , Medical Bioinformatics Unit, Institute of Health Carlos III, Ctra. Majadahonda a Pozuelo, Madrid, Spain
I. Hermosilla , Medical Bioinformatics Unit, Institute of Health Carlos III, Ctra. Majadahonda a Pozuelo, Madrid, Spain
F. Mart?n-S?nchez , Medical Bioinformatics Unit, Institute of Health Carlos III, Ctra. Majadahonda a Pozuelo, Madrid, Spain
pp. 222

ARMEDA II: Supporting Genomic Medicine through the Integration of Medical and Genetic Databases (Abstract)

J. Crespo , Polytechnical University of Madrid, Spain
H. Billhardt , University King Juan Madrid, Spain0
D. P?rez-Rey , Polytechnical University of Madrid, Spain
A. Sousa , IEETA. University of Aveiro, Portugal
V. Maojo , Polytechnical University of Madrid, Spain
M. Garc?a-Remesal , Polytechnical University of Madrid, Spain
R. Alonso-Calvo , Polytechnical University of Madrid, Spain
F. Martin , Institute of Health Carlos III, Madrid, Spain
pp. 227
Banquet Speech
Keynote Speech
Invited Speech

Virtual Reality in Brain Intervention (Abstract)

Wieslaw L. Nowinski , Institute for Infocomm Research, Singapore
pp. 245
Session A4: Gene Expression

Identifying Projected Clusters from Gene Expression Profiles (Abstract)

Kevin Y. Yip , University of Hong Kong
David W. Cheung , University of Hong Kong
Michael K. Ng , University of Hong Kong
Kei-Hoi Cheung , Yale University
pp. 259

Model-Based Clustering with Genes Expression Dynamics for Time-Course Gene Expression Data (Abstract)

Fang-Xiang Wu , University of Saskatchewan, Canada
Wen-Jun Zhang , University of Saskatchewan, Canada
Anthony J. Kusalik , University of Saskatchewan, Canada
pp. 267

Enhanced pClustering and Its Applications to Gene Expression Data (Abstract)

Sungroh Yoon , Stanford University
Giovanni De Micheli , Stanford University
Luca Benini , University of Bologna
Christine Nardini , University of Bologna
pp. 275

Mining Deterministic Biclusters in Gene Expression Data (Abstract)

Beng Chin Ooi , National University of Singapore
Zonghong Zhang , National University of Singapore
Alvin Teo , National University of Singapore
Kian-Lee Tan , National University of Singapore
pp. 283
Session B4: Transcriptome and Functional Genomics

The Application of Alternative Splicing Graphs in Quantitative Analysis of Alternative Splicing Form from EST Database (Abstract)

Tze-Wei Huang , Providence University, Taiwan
Yaw-Ling Lin , National Science Council, Taiwan
Hsun-Chang Chang , Providence University, Taiwan
Fang-Rong Hsu , Taichung Healthcare and Management University, Taiwan
Po-Shun Yu , Providence University, Taiwan
pp. 293

A Method for Evaluating the Quality of String Dissimilarity Measures and Clustering Algorithms for EST Clustering (Abstract)

Judith Zimmermann , ETH Zurich
Scott Hazelhurst , University of the Witwatersrand, South Africa
Zsuzsanna Lipt? , Universit?t Bielefeld, Germany
pp. 301

Genome-Wide Alternative Splicing Events Detection through Analysis of Large Scale ESTs (Abstract)

Che Feng Chen , Taichung Healthcare & Management University
Hui-Ling Peng , National Chiao-Tung University
Ying Tsong Chen , National Chiao-Tung University
Min Yao Shih , Taichung Healthcare & Management University
Yin-Te Tsai , Providence University
Hwan-You Chang , National Tsing-Hua University, Hsin-chu, Taiwan
Yaw-Lin Lin , Providence University
F. R. Hsu , Taichung Healthcare & Management University; Taichung Healthcare & Management University
Chia-Hung Liu , Taichung Healthcare & Management University
Chia Yang Cheng , Taichung Healthcare & Management University
pp. 310

Incorporating Ontology-Driven Similarity Knowledge into Functional Genomics: An Exploratory Study (Abstract)

Francisco Azuaje , University of Ulster at Jordanstown, UK
Olivier Bodenreider , National Library of Medicine, Bethesda, USA
pp. 317

Identifying the Combination of Genetic Factors that Determine Susceptibility to Cervical Cancer (Abstract)

Ton-Yuen Chu , Tri-Service General Hospital, Taiwan
Kai-Chih Hu , National Central University, Taiwan
Jorng-Tzong Horng , National Central University, Taiwan; National Central University, Taiwan
Hsien-Da Huang , National Chiao-Tung University, Taiwan
Horn-Cheng Lai , Tri-Service General Hospital, Taiwan
Li-Cheng Wu , National Central University, Taiwan
pp. 325
Invited Speech

Death Domain Resource: an Integrated Protein Domain Database (PDF)

Y-W. Deng , National Yang Ming University
C-H. Wei , National Yang Ming University
U-C. Yang , National Yang Ming University
pp. 333
Session A5: Microarray Data Analysis

Markov Decision Processes Based Optimal Control Policies for Probabilistic Boolean Networks (Abstract)

Osman Abul , University of Calgary, Alberta, Canada; Middle East Technical University, Ankara, Turkey
Faruk Polat , Middle East Technical University, Ankara, Turkey
Reda Alhajj , University of Calgary, Alberta, Canada
pp. 337

A Multi-Information based Gene Scoring Model with Applications on Analysis of Hepatocellular Carcinoma (Abstract)

Vincent Shin-Mu Tseng , National Cheng Kung University, Tainan, Taiwan
Hsieh-Hui Yu , National Cheng Kung University, Tainan, Taiwan
Jiin-Haur Chuang , Chang Gung University
pp. 345

Identifying Significant Genes from Microarray Data (Abstract)

Cameron McMunn-Coffran , Fordham University, New York, NY
D. Frank Hsu , Fordham University, New York, NY
Hongfang Liu , Columbia University, New York, NY
Stuart Brown , New York University, NY
Cheng-Yan Kao , National Taiwan University, Taipei
Han-Yu Chuang , National Taiwan University, Taipei
pp. 358

A Time Series Analysis of Microarray Data (Abstract)

Ozgur Ozturk , The Ohio State University
William C. Ray , Columbus Children's Hospital Research Institute (CCRI), Columbus, Ohio; The Ohio State University
David Armbruster , Columbus Children's Hospital Research Institute (CCRI), Columbus, Ohio; The Ohio State University
Hakan Ferhatosmanoglu , The Ohio State University
Selnur Erdal , Columbus Children's Hospital Research Institute (CCRI), Columbus, Ohio; The Ohio State University
pp. 366
Session B5: Homology Search

Good Spaced Seeds For Homology Search (Abstract)

Kwok Pui Choi , National University of Singapore (NUS), Singapore
pp. 379

Estimating Seed Sensitivity on Homogeneous Alignments (Abstract)

Laurent Noé , LORIA/INRIA-Lorraine, France
Gregory Kucherov , LORIA/INRIA-Lorraine, France
Yann Ponty , LRI, France
pp. 387

An IDC-based Algorithm for Efficient Homology Filtration with Guaranteed Seriate Coverage (Abstract)

Tzu Fang Sheu , National Tsing-Hua University, Taiwan
Ching Hua Shih , National Tsing-Hua University, Taiwan
Hsiao Ping Lee , National Tsing-Hua University, Taiwan
Yin Te Tsai , Providence University, Taiwan
Chuan Yi Tang , National Tsing-Hua University, Taiwan
pp. 395

Efficient Filtration of Sequence Similarity Search Through Singular Value Decomposition (Abstract)

S. Alireza Aghili , University of California Santa Barbara
Ozgur D. Sahin , University of California Santa Barbara
Divyakant Agrawal , University of California Santa Barbara
Amr El Abbadi , University of California Santa Barbara
pp. 403

Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds (Abstract)

Kun-Mao Chao , National Taiwan University
Sheng-Ho Wang , National Taiwan University
Pao-Hsian Huang , National Taiwan University
Liang Ye , Iowa State University
Xiaoqiu Huang , Iowa State University
Yang-Ho Chen , National Taiwan University
I-Hsuan Yang , National Taiwan University
pp. 411
Session A6: Proteomics

Towards a Proteomics Meta-Classification (Abstract)

Barry Smith , University at Buffalo, USA
Anand Kumar , University of Pavia, Italy
pp. 419

An Efficient Mechanism for Prediction of Protein-Ligand Interactions Based on Analysis of Protein Tertiary Substructures (Abstract)

Chien-Yu Chen , National Taiwan University, Taipei
Yen-Jen Oyang , National Taiwan University, Taipei
Hsueh-Fen Juan , National Taipei University of Technology, Taiwan
Darby Tien-Hau Chang , National Taiwan University, Taipei
Hsuan-Cheng Huang , Academic Sinica, Taipei, Taiwan
pp. 427

Domain Combination Based Protein-Protein Interaction Possibility Ranking Method (Abstract)

Dong-Soo Han , Information and Communications University, Korea
Hong-Soog Kim , Information and Communications University, Korea
Woo-Hyuk Jang , Information and Communications University, Korea
Sung-Doke Lee , Information and Communications University, Korea
pp. 434

Dihedral Angle Database Based on Disulfide Bonds (Abstract)

Saravanan Dayalan , RMIT University, Melbourne, Australia
Savitri Bevinakoppa , RMIT University, Melbourne, Australia
pp. 442
Session B6: Sequence Analysis

Automating the Determination of Open Reading Frames in Genomic Sequences Using the Web Service Techniques -- A Case Study using SARS Coronavirus (Abstract)

Von-Wun Soo , National Tsing-Hua University, Hsinchu, Taiwan
Wei-Shen Lai , National Tsing-Hua University, Hsinchu, Taiwan
Yu-Ling Huang , National Tsing-Hua University, Hsinchu, Taiwan
Paul Hsueh-Min Chang , National Tsing-Hua University, Hsinchu, Taiwan
Tai-Yu Chen , National Tsing-Hua University, Hsinchu, Taiwan
Shiun-Cheng Su , National Tsing-Hua University, Hsinchu, Taiwan
pp. 451

FMGA: Finding Motifs by Genetic Algorithm (Abstract)

S. H. Shih , Taichung Healthcare and Management University
Falcon F. M. Liu , Taichung Healthcare and Management University, Taiwan
Jeffrey J. P. Tsai , Taichung Healthcare and Management University, Taiwan; University of Illinois at Chicago, USA
S. N. Chen , Taichung Healthcare and Management University
R. M. Chen , Taichung Healthcare and Management University
pp. 459

A Computational Framework for Nucleic Acid Sub-Sequence Identification (Abstract)

Scott Mann , Deakin University, Melbourne, Australia
Luke Eaton , Deakin University, Melbourne, Australia
Yi-Ping Phoebe Chen , Deakin University, Melbourne, Australia
pp. 467

Automatically Predicting Possible Loci of Variable Number of Tandem Repeats (Abstract)

Cheng-Yan Kao , National Taiwan University, Taipei
Yi-Hung Chiang , National Taiwan University, Taipei
Chien-Shun Chiou , Center for Disease Control, Taiwan
Hsueh-I Lu , Academia Sinica, Taipei, Taiwan
Chia-Hung Chang , National Taiwan University, Taipei
Han-Yu Chuang , National Taiwan University, Taipei
pp. 475

Variable Number of Tandem Repeats (VNTR) Stands (Abstract)

Wing-Kin Sung , National University of Singapore
Xiaoan Dong , National University of Singapore
Sam Yuan Sung , National University of Singapore
Chew Lim Tan , National University of Singapore
pp. 483
Keynote Speech
Invited Speech

SemanticObjects and Biomedical Informatics (Abstract)

Masayoshi Yoshimura , NEC SOFT, Japan
Atsushi Kitazawa , NEC SOFT, Japan
pp. 497
Session A7: Structural Biology

Interactive 3D Protein Structure Visualization Using Virtual Reality (Abstract)

Joerg Meyer , University of California, Irvine
Elke Moritz , University of California, Irvine
pp. 503

Automatic Protein Structure Classification through Structural Fingerprinting (Abstract)

Zeyar Aung , National University of Singapore
Kian-Lee Tan , National University of Singapore
pp. 508

Derivation and Analysis of Fragment Libraries of Protein Structures (Abstract)

Ta-Tsen Soong , Academia Sinica, Taipei, Taiwan
Ming-Jing Hwang , Academia Sinica, Taipei, Taiwan
Jan-Ming Ho , Academia Sinica, Taipei, Taiwan
In-Yee Lee , Academia Sinica, Taipei, Taiwan; National Taiwan University, Taipei
pp. 516

A Fast Protein Structure Retrieval System Using Image-Based Distance Matrices and Multidimensional Index (Abstract)

Grant Scott , University of Missouri, Columbia, MO
Pin-Hao Chi , University of Missouri, Columbia, MO
Chi-Ren Shyu , University of Missouri, Columbia, MO
pp. 522
Session B7: Algorithms

An Improved Algorithm for the Maximum Agreement Subtree Problem (Abstract)

Chuan-Min Lee , National Chung Cheng University, Taiwan
Maw-Shang Chang , National Chung Cheng University, Taiwan
Ling-Ju Hung , National Chung Cheng University, Taiwan
Chuan-Yi Tang , National Tsing Hua University, Taiwan
pp. 533

Protein Threading with Profiles and Constraints (Abstract)

Morihiro Hayashida , Kyoto University, Japan
Tatsuya Akutsu , Kyoto University, Japan
Etsuji Tomita , The University of Electro-Communications, Japan
Katsuhisa Horimoto , The University of Tokyo, Japan
Jun'ichi Suzuki , The University of Electro-Communications, Japan
pp. 537

A Mutation-Sensitive Approach for Locating Conserved Gene Pairs between Related Species (Abstract)

T. W. Lam , University of Hong Kong
Prudence W. H. Wong , University of Hong Kong
S. M. Yiu , University of Hong Kong
W. K. Sung , National University of Singapore
H. L. Chan , University of Hong Kong
pp. 545

Sorting by Transpositions Based on the First Increasing Substring Concept (Abstract)

R. C. T. Lee , National Chi-Nan University, Taiwan
M. C. Chen , National Chi-Nan University, Taiwan
pp. 553
Session A8: Protein-Protein Interactions

A Cross-species Study of the Protein-protein Interaction Networks via the Random Graph Approach (Abstract)

Chien-Hung Huang , Ling Tung College, Taiwan
Ka-Lok Ng , Taichung Healthcare and Management University, Taiwan
pp. 561

Discovering Novel Interacting Motif Pairs from Large Protein-Protein Interaction Datasets (Abstract)

Soon-Heng Tan , Institute for Infocomm Research, Singapore
Win-Kin Sung , National University of Singapore
See-Kiong Ng , Institute for Infocomm Research, Singapore
pp. 568

Prediction of Protein-Protein Interactions Using Support Vector Machines (Abstract)

Shinsuke Dohkan , The University of Tokyo, Japan
Toshihisa Takagi , The University of Tokyo, Japan
Asako Koike , The University of Tokyo, Japan; Hitachi Ltd., Japan
pp. 576
Session B8: Algorithms and Intelligent Systems

Indexing Genomic Databases (Abstract)

D. Krane , Wright State University, Dayton, OH
M. Raymer , Wright State University, Dayton, OH
T. Doom , Wright State University, Dayton, OH
G. Cooper , Wright State University, Dayton, OH
N. Futamura , Wright State University, Dayton, OH
pp. 587

Phylogenetic Reconstruction from Arbitrary Gene-Order Data (Abstract)

Bernard M. E. Moret , University of New Mexico, Albuquerque
Liying Cui , Pennsylvania State University
Jijun Tang , University of New Mexico, Albuquerque
Claude W. dePamphilis , Pennsylvania State University
pp. 592

Semantic Analysis and Synthesis of Complex Biological Systems (Abstract)

Vittorio Christini , University of California, Irvine
Arthur Lander , Department of Developmental Cell Biology
Fei Xie , Department of EECS and Biomedical Engineering
Phillip C-y. Sheu , Department of EECS and Biomedical Engineering
pp. 600

Author Index (PDF)

pp. 611
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