The Community for Technology Leaders
13th IEEE International Conference on BioInformatics and BioEngineering (2001)
Bethesda, Maryland
Mar. 4, 2001 to Mar. 6, 2001
ISBN: 0-7695-1423-5

Querying phylogenies visually (Abstract)

H.M. Jamil , Dept. of Comput. Sci., Mississippi State Univ., MS, USA
pp. 3-10

PocketMol: a molecular visualization tool for the Pocket PC (Abstract)

J.R. Gilder , Dept. of Comput. Sci. & Eng., Wright State Univ., Dayton, OH, USA
pp. 11-14

Optimized seamless integration of biomolecular data (Abstract)

B.A. Eckman , GlaxoSmithKline, King of Prussia, PA, USA
pp. 23-32

PSST... the probabilistic sequence search tool (Abstract)

C.J. Miller , Dept. of Comput. Sci., Manchester Univ., UK
pp. 33-40

Interrelated two-way clustering: an unsupervised approach for gene expression data analysis (Abstract)

Chun Tang , Dept. of Comput. Sci. & Eng., State Univ. of New York, Buffalo, NY, USA
pp. 41-48

A fast pruning algorithm for optimal sequence alignment (Abstract)

A. Davidson , Dept. of Comput. Sci., Alberta Univ., Edmonton, Alta., Canada
pp. 49-56

Applying data warehouse concepts to gene expression data management (Abstract)

V.M. Markowitz , Data Manage. Syst., Gene Logic Inc, Berkeley, CA, USA
pp. 65-72

Utilizing multiple bioinformatics information sources: an XML database approach (Abstract)

R.K. Wong , Sch. of Comput. Sci. & Eng., New South Wales Univ., Sydney, NSW, Australia
pp. 73-80

Comparing algorithms for large-scale sequence analysis (Abstract)

H. Nash , Parabon Computation, Inc, Fairfax, VA, USA
pp. 89-96

An XML application for genomic data interoperation (Abstract)

Kei-Hoi Cheung , Center for Med. Informatics, Yale Univ., New Haven, CT, USA
pp. 97-103

Thinking nonlinearly about brain dynamics: a neurocommentary (Abstract)

M.E. Brandt , Sch. of Health Inf. Sci., Univ. of Texas Health Sci. Center, Houston, TX, USA
pp. 112-118

Querying Phylogenies Visually (Abstract)

Hasan M. Jamil , Mississippi State University, USA
Giovanni A. Modica , Mississippi State University, USA
Maria A. Teran , Mississippi State University, USA
pp. 3

PocketMol - A Molecular Visualization Tool for the Pocket PC (Abstract)

Jason R. Gilder , Wright State University
Michael Raymer , Wright State University
Travis Doom , Wright State University
pp. 11

GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data (Abstract)

Mike Cornell , University of Manchester
Norman W. Paton , University of Manchester
Shengli Wu , University of Manchester
Carole A. Goble , University of Manchester
Crispin J. Miller , University of Manchester
Paul Kirby , University of Manchester
Karen Eilbeck , University of Manchester
Andy Brass , University of Manchester
Andrew Hayes , University of Manchester
Stephen G. Oliver , University of Manchester
pp. 15

Optimized Seamless Integration of Biomolecular Data (Abstract)

Barbara A. Eckman , GlaxoSmithKline
Zoé Lacroix , Arizona State University
Louiqa Raschid , University of Maryland
pp. 23

PSST... The Probabilistic Sequence Search Tool (Abstract)

Crispin J. Miller , The University of Manchester
Teresa K. Attwood , The University of Manchester
pp. 33

Interrelated Two-way Clustering: An Unsupervised Approach for Gene Expression Data Analysis (Abstract)

Chun Tang , State University of New York at Buffalo
Li Zhang , State University of New York at Buffalo
Murali Ramanathan , State University of New York at Buffalo
Aidong Zhang , State University of New York at Buffalo
pp. 41

PRECIS: An automated pipeline for producing concise reports about proteins (Abstract)

P.W. Lord , University of Manchester
J.R. Reich , University of Manchester
A. Mitchell , University of Manchester
R.D. Stevens , University of Manchester
T.K. Attwood , University of Manchester
C.A. Goble , University of Manchester
pp. 57

Utilizing Multiple Bioinformatics Information Sources: An XML Database Approach (Abstract)

Raymond K. Wong , University of New South Wales
William M. Shui , University of New South Wales
pp. 73

An automated approach to modelling class II MHC alleles and predicting peptide binding (Abstract)

Martin T. Swain , University of Aberdeen
Anthony J. Brooks , University of Aberdeen
Graham J.L. Kemp , University of Aberdeen
pp. 81

Comparing Algorithms for Large-Scale Sequence Analysis (Abstract)

Hadon Nash , Parabon Computation, Inc.
Douglas Blair , Parabon Computation, Inc.
John Grefenstette , Parabon Computation, Inc.
pp. 89

An XML Application for Genomic Data Interoperation (Abstract)

Kei-Hoi Cheung , Yale University
Yang Liu , Yale University
Anuj Kumar , Yale University
Michael Snyder , Yale University
Mark Gerstein , Yale University
Perry Miller , Yale University
pp. 97

Discovering Common of Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures (Abstract)

H.-D. Huang , National Central University
S.-F. Fang , National Central University
J.-T. Horng , National Central University
C.-Y. Kao , National Taiwan University
pp. 104

Thinking Nonlinearly about Brain Dynamics: A Neurocommentary (Abstract)

Michael E. Brandt , University of Texas Health Science Center
pp. 112

Searching Online Journals for Fluorescence Microscope Images Depicting Protein Subcellular Location Patterns (Abstract)

Robert F. Murphy , Carnegie Mellon University
Meel Velliste , Carnegie Mellon University
Jie Yao , Carnegie Mellon University
Gregory Porreca , Carnegie Mellon University
pp. 119

Texture-Based 3-D Brain Imaging (Abstract)

Sagar Saladi , Mississippi State University
Pujita Pinnamaneni , Mississippi State University
Joerg Meyer , Mississippi State University
pp. 136

Supporting Remote User Defined Functions in Heterogeneous Biological Databases (Abstract)

Liangyou Chen , Mississippi State University
Hasan M. Jamil , Mississippi State University
pp. 144

Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration (Abstract)

Julia Ponomarenko , Institute of Cytology and Genetics
Tatyana Merkulova , Institute of Cytology and Genetics
Galina Orlova , Institute of Cytology and Genetics
Elena Gorshkova , Institute of Cytology and Genetics
Oleg Fokin , Institute of Cytology and Genetics
Mikhail Ponomarenko , Institute of Cytology and Genetics
pp. 153

Medical Decision-Making and Collaborative Reasoning (Abstract)

J. M. Quintero , Ecole Nationale Sup?rieure des T?l?communications de Bretagne
M. Abraham , Ecole Nationale Sup?rieure des T?l?communications de Bretagne
B. Solaiman , Ecole Nationale Sup?rieure des T?l?communications de Bretagne
A. Aguilera , Universidad de Carabobo
H. Villegas , Universidad de Carabobo
G. Montilla , Universidad de Carabobo
pp. 161

Comparing Trees in a Phylogenetic Relationship Repository (Abstract)

John Bluis , University of Connecticut
Ravi Nori , University of Connecticut
Hsin-Wei Wang , University of Connecticut
Pinglei Zhou , University of Connecticut
J. Peter Gogarten , University of Connecticut
Dong-Guk Shin , University of Connecticut
pp. 166

An Algebra for Semantic Interoperability of Information Sources (Abstract)

Prasenjit Mitra , Stanford University
Gio Wiederhold , Stanford University
pp. 174

Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs (Abstract)

Samuel Ieong , Yale University
Ming-Yang Kao , Northwestern University
Tak-Wah Lam , The University of Hong Kong
Wing-Kin Sung , The University of Hong Kong
Siu-Ming Yiu , The University of Hong Kong
pp. 183

Gene Classification Using Expression Profiles: A Feasibility Study (Abstract)

Michihiro Kuramochi , University of Minnesota
George Karypis , University of Minnesota
pp. 191

Development of a Robotic Device for MRI-Guided Interventions in the Breast (Abstract)

Nikolaos V. Tsekos , Mallinckrodt Institute of Radiology
John Shudy , Artemis MRI, LLC
Essa Yacoub , University of Minnesota
Panagiotis V. Tsekos , Multitask Consulting, Ltd.
Ioannis G. Koutlas , University of Minnesota
pp. 201

Chemosensory Adaptation in an Electronic Nose (Abstract)

R. Gutierrez-Osuna , Wright State University
N. Powar , Wright State University
P. Sun , Wright State University
pp. 223

Knowledge Discovery in Biological Datasets Using a Hybrid Bayes Classifier/Evolutionary Algorithm (Abstract)

Michael L. Raymer , Wright State University
Leslie A. Kuhn , Michigan State University
William F. Punch , Michigan State University
pp. 236

Audio and Vision-Based Evaluation of Parkinson's Disease from Discourse Video (Abstract)

Francis Quek , Wright State U.
Robert Bryll , Wright State U.
Mary Harper , Purdue University
Lei Chen , Purdue University
Lorraine Ramig , University of Colorado
pp. 246

Investigation of Ultrasound Image Based Correction of Intraoperative Brain Shift (Abstract)

Lisa M. Bates , Biomedical Imaging Resource
Richard A. Robb , Biomedical Imaging Resource
pp. 254

Profile Combinatorics for Fragment Selection in Comparative Protein Structure Modeling (Abstract)

Deacon J. Sweeney , Wright State University
Gerald M. Alter , Wright State University
Michael L. Raymer , Wright State University
Travis E. Doom , Wright State University
pp. 271

Author Index (PDF)

pp. 279
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