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Simulating DNA's dynamics requires a sophisticated array of algorithms appropriate for DNA's impressive spectrum of spatial and temporal levels. The authors describe computational challenges, solution approaches, and applications that their group has performed in DNA dynamics.
Daniel A. Strahs, Jing Huang, Daniel A. Beard, Tamar Schlick, Xiaoliang Qian, "Computational Challenges in Simulating Large DNA over Long Times", Computing in Science & Engineering, vol. 2, no. , pp. 38-51, November/December 2000, doi:10.1109/5992.881706
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