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Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Kevin Liu, Serita Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy Warnow
Issue Date:January 2009
pp. 7-21
Several methods have been developed for simultaneous estimation of alignment and tree, of which POY is the most popular. In a 2007 paper published in Systematic Biology, Ogden and Rosenberg reported on a simulation study in which they compared POY to estim...
 
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By C. Randal Linder, Kevin Liu, Serita Nelesen, Sindhu Raghavan, Tandy Warnow
Issue Date:January 2009
pp. 7-21
Several methods have been developed for simultaneous estimation of alignment and tree, of which POY is the most popular. In a 2007 paper published in Systematic Biology, Ogden and Rosenberg reported on a simulation study in which they compared POY to estim...
     
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