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Displaying 1-5 out of 5 total
The Undirected Incomplete Perfect Phylogeny Problem
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Ravi Vijaya Satya, Amar Mukherjee
Issue Date:October 2008
pp. 618-629
The incomplete perfect phylogeny (IPP) problem and the incomplete perfect phylogeny haplotyping (IPPH) problem deal with constructing a phylogeny for a given set of haplotypes or genotypes with missing entries. The earlier approaches for both of these prob...
Accelerating Biomedical Research in Designing Diagnostic Assays, Drugs, and Vaccines
Found in: Computing in Science and Engineering
By Anders Wallqvist, Nela Zavaljevski, Ravi Vijaya Satya, Rajkumar Bondugula, Valmik Desai, Xin Hu, Kamal Kumar, Michael Lee, In-Chul Yeh, Chenggang Yu
Issue Date:September 2010
pp. 46-55
The US Department of Defense Biotechnology High-Performance Computing Software Applications Institute for Force Health Protection develops state-of-the-art high-performance computing applications that accelerate biomedical research in the development of di...
A Flexible Compressed Text Retrieval System Using a Modified LZW Algorithm
Found in: Data Compression Conference
By Nan Zhang, Tao Tao, Ravi Vijaya Satya, Amar Mukherjee
Issue Date:March 2005
pp. 493-493
No summary available.
Modified LZW Algorithm for Efficient Compressed Text Retrieval
Found in: Information Technology: Coding and Computing, International Conference on
By Nan Zhang, Tao Tao, Ravi Vijaya Satya, Amar Mukherjee
Issue Date:April 2004
pp. 224
With increasing amount of text data being stored in the compressed format, efficient information retrieval in the compressed domain has become a major concern. Being able to randomly access the compressed data is highly desirable for efficient retrieval an...
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Found in: Computational Systems Bioinformatics Conference, International IEEE Computer Society
By Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga
Issue Date:August 2003
pp. 294
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide motifs have experimentally been shown to be immuno-stimulatory while certain ot...