A Genomic Analysis Pipeline and Its Application to Pediatric Cancers
IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Michael Zeller,Christophe N. Magnan,Vishal R. Patel,Paul Rigor,Leonard Sender,Pierre Baldi
Issue Date:September 2014
We present a cancer genomic analysis pipeline which takes as input sequencing reads for both germline and tumor genomes and outputs filtered lists of all genetic mutations in the form of short ranked list of the most affected genes in the tumor, using eith...