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The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Li-San Wang, Jim Leebens-Mack, P. Kerr Wall, Kevin Beckmann, Claude W. dePamphilis, Tandy Warnow
Issue Date:July 2011
pp. 1108-1119
Multiple sequence alignment is typically the first step in estimating phylogenetic trees, with the assumption being that as alignments improve, so will phylogenetic reconstructions. Over the last decade or so, new multiple sequence alignment methods have b...
 
PhylOnt: A domain-specific ontology for phylogeny analysis
Found in: 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
By Maryam Panahiazar,Ajith Ranabahu,Vahid Taslimi,Hima Yalamanchili,Arlin Stoltzfus,Jim Leebens-Mack,Amit P. Sheth
Issue Date:October 2012
pp. 1-6
Phylogenetic analyses can resolve historical relationships among genes, organisms or higher taxa. Understanding such relationships can elucidate a wide range of biological phenomena including the role of adaptation as a driver of diversification, the impor...
 
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Claude W. dePamphilis, Jim Leebens-Mack, Kevin Beckmann, Li-San Wang, P. Kerr Wall, Tandy Warnow
Issue Date:July 2011
pp. 1108-1119
Multiple sequence alignment is typically the first step in estimating phylogenetic trees, with the assumption being that as alignments improve, so will phylogenetic reconstructions. Over the last decade or so, new multiple sequence alignment methods have b...
     
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