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Displaying 1-7 out of 7 total
Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Francesco Abate,Andrea Acquaviva,Elisa Ficarra,Roberto Piva,Enrico Macii
Issue Date:May 2013
pp. 619-631
An effective knowledge extraction and quantification methodology from biomedical literature would allow the researcher to organize and analyze the results of high-throughput experiments on microarrays and next-generation sequencing technologies. Despite th...
 
A Cloud Infrastructure for Optimization of a Massive Parallel Sequencing Workflow
Found in: Cluster Computing and the Grid, IEEE International Symposium on
By Olivier Terzo,Lorenzo Mossucca,Andrea Acquaviva,Francesco Abate,Rosalba Provenzano
Issue Date:May 2012
pp. 678-679
Massive Parallel Sequencing is a term used to describe several revolutionary approaches to DNA sequencing, the so-called Next Generation Sequencing technologies. These technologies generate millions of short sequence fragments in a single run and can be us...
 
Reverse Engineering of TopHat: Splice Junction Mapper for Improving Computational Aspect
Found in: Intelligent Systems, Modelling and Simulation, International Conference on
By Olivier Terzo,Lorenzo Mossucca,Andrea Acquaviva,Francesco Abate,Elisa Ficarra,Rosalba Provenzano
Issue Date:February 2012
pp. 171-176
TopHat is a fast splice junction mapper for Next Generation Sequencing analysis, a technology for functional genomic research. Next Generation Sequencing technology allows more accurate analysis increasing data to elaborate, this opens to new challenges in...
 
A novel framework for chimeric transcript detection based on accurate gene fusion model
Found in: Bioinformatics and Biomedicine Workshop, IEEE International Conference on
By Francesco Abate,Andrea Acquaviva,Elisa Ficarra,Giulia Paciello,Enrico Macii,Alberto Ferrarini,Massimo Delledonne,Simona Soverini,Giovanni Martinelli
Issue Date:November 2011
pp. 34-41
Next generation sequencing plays a key role in the detection of structural variations. Chimeric transcripts are relevant examples of such variations, as they are involved in several diseases. In this work, we propose an effective methodology for the detect...
 
Coping with Obsolescence of Processor Cores in Critical Applications
Found in: Defect and Fault-Tolerance in VLSI Systems, IEEE International Symposium on
By Francesco Abate, Massimo Violante
Issue Date:October 2008
pp. 24-32
Critical applications are more and more relying on electronic components to provide the services they are designed for. The obsolescence of such electronic components has already been recognized as a critical issue that must be properly addressed. Among th...
 
Integration of Literature with Heterogeneous Information for Genes Correlation Scoring
Found in: ACM Journal on Emerging Technologies in Computing Systems (JETC)
By Andrea Acquaviva, Elisa Ficarra, Enrico Macii, Francesco Abate
Issue Date:November 2013
pp. 1-22
Determining the correlation between biomedical terms is a powerful instrument to help scientist research activity, both to understand experimental results and to design new ones. In particular, a great potential comes from the integration of the many heter...
     
Gelsius: A Literature-Based Workflow for Determining Quantitative Associations between Genes and Biological Processes
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Andrea Acquaviva, Elisa Ficarra, Roberto Piva, Enrico Macii, Francesco Abate
Issue Date:May 2013
pp. 619-631
An effective knowledge extraction and quantification methodology from biomedical literature would allow the researcher to organize and analyze the results of high-throughput experiments on microarrays and next-generation sequencing technologies. Despite th...
     
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