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The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Li-San Wang, Jim Leebens-Mack, P. Kerr Wall, Kevin Beckmann, Claude W. dePamphilis, Tandy Warnow
Issue Date:July 2011
pp. 1108-1119
Multiple sequence alignment is typically the first step in estimating phylogenetic trees, with the assumption being that as alignments improve, so will phylogenetic reconstructions. Over the last decade or so, new multiple sequence alignment methods have b...
 
Phylogenetic Reconstruction from Arbitrary Gene-Order Data
Found in: Bioinformatic and Bioengineering, IEEE International Symposium on
By Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis
Issue Date:May 2004
pp. 592
Phylogenetic reconstruction from gene-order data has attracted attention from both biologists and computer scientists over the last few years. So far, our software suite GRAPPA is the most accurate approach, but it requires that all genomes have identical ...
 
The Impact of Multiple Protein Sequence Alignment on Phylogenetic Estimation
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Claude W. dePamphilis, Jim Leebens-Mack, Kevin Beckmann, Li-San Wang, P. Kerr Wall, Tandy Warnow
Issue Date:July 2011
pp. 1108-1119
Multiple sequence alignment is typically the first step in estimating phylogenetic trees, with the assumption being that as alignments improve, so will phylogenetic reconstructions. Over the last decade or so, new multiple sequence alignment methods have b...
     
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