Search For:

Displaying 1-3 out of 3 total
Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Bernard M.E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth Timme
Issue Date:January 2004
pp. 13-23
Phylogenetic networks model the evolutionary history of sets of organisms when events such as hybrid speciation and horizontal gene transfer occur. In spite of their widely acknowledged importance in evolutionary biology, phylogenetic networks have so far ...
 
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Kevin Liu, Serita Nelesen, Sindhu Raghavan, C. Randal Linder, Tandy Warnow
Issue Date:January 2009
pp. 7-21
Several methods have been developed for simultaneous estimation of alignment and tree, of which POY is the most popular. In a 2007 paper published in Systematic Biology, Ogden and Rosenberg reported on a simulation study in which they compared POY to estim...
 
Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By C. Randal Linder, Kevin Liu, Serita Nelesen, Sindhu Raghavan, Tandy Warnow
Issue Date:January 2009
pp. 7-21
Several methods have been developed for simultaneous estimation of alignment and tree, of which POY is the most popular. In a 2007 paper published in Systematic Biology, Ogden and Rosenberg reported on a simulation study in which they compared POY to estim...
     
 1