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Characterizing the Topology of Probabilistic Biological Networks
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Andrei Todor,Alin Dobra,Tamer Kahveci
Issue Date:July 2013
pp. 970-983
Biological interactions are often uncertain events, that may or may not take place with some probability. This uncertainty leads to a massive number of alternative interaction topologies for each such network. The existing studies analyze the degree distri...
 
Uncertain interactions affect degree distribution of biological networks
Found in: 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
By Andrei Todor,Alin Dobra,Tamer Kahveci
Issue Date:October 2012
pp. 1-5
Biological interactions are often uncertain events, that may or may not take place under different scenarios. Existing studies analyze the degree distribution of biological networks by assuming that all the given interactions take place under all circumsta...
 
Reachability analysis in probabilistic biological networks
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics
By Haitham Gabr,Andrei Todor,Alin Dobra,Tamer Kahveci
Issue Date:August 2014
pp. 1
Extra-cellular molecules trigger a response inside the cell by initiating a signal at special membrane receptors (i.e., sources), which is then transmitted to reporters (i.e., targets) through various chains of interactions among proteins. Understanding wh...
 
Characterizing the Topology of Probabilistic Biological Networks
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Alin Dobra, Andrei Todor, Tamer Kahveci
Issue Date:July 2013
pp. 970-983
Biological interactions are often uncertain events, that may or may not take place with some probability. This uncertainty leads to a massive number of alternative interaction topologies for each such network. The existing studies analyze the degree distri...
     
Probabilistic Biological Network Alignment
Found in: IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB)
By Alin Dobra, Andrei Todor, Tamer Kahveci
Issue Date:January 2013
pp. 109-121
Interactions between molecules are probabilistic events. An interaction may or may not happen with some probability, depending on a variety of factors such as the size, abundance, or proximity of the interacting molecules. In this paper, we consider the pr...
     
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