Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval

	This Article
	Subscribers, please Login Purchase article: $19 PDF IEEE Xplore Subscribers RSS feed
	Share
	Email this Article to a friend
	Bibliographic References
	ASCII Text BibTex RefWorks Procite/RefMan
	Add to:
	Digg Furl Spurl Blink Simpy Google Del.icio.us Y!MyWeb
	Search
	Similar Articles Articles by Takenao Ohkawa Articles by Yusuke Nonomura Articles by Kenji Inoue

2004 Symposium on Applications and the Internet-Workshops (SAINT 2004 Workshops)

Tokyo, Japan

January 26-January 30

ISBN: 0-7695-2050-2

	ASCII Text	x
	Takenao Ohkawa, Yusuke Nonomura, Kenji Inoue, "Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval," Applications and the Internet Workshops, IEEE/IPSJ International Symposium on, pp. 681, 2004 Symposium on Applications and the Internet-Workshops (SAINT 2004 Workshops), 2004.

	BibTex	x
	@article{ 10.1109/SAINTW.2004.1268715, author = {Takenao Ohkawa and Yusuke Nonomura and Kenji Inoue}, title = {Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval}, journal ={Applications and the Internet Workshops, IEEE/IPSJ International Symposium on}, volume = {0}, year = {2004}, isbn = {0-7695-2050-2}, pages = {681}, doi = {http://doi.ieeecomputersociety.org/10.1109/SAINTW.2004.1268715}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Applications and the Internet Workshops, IEEE/IPSJ International Symposium on TI - Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval SN - 0-7695-2050-2 SP EP A1 - Takenao Ohkawa, A1 - Yusuke Nonomura, A1 - Kenji Inoue, PY - 2004 KW - null VL - 0 JA - Applications and the Internet Workshops, IEEE/IPSJ International Symposium on ER -

Takenao Ohkawa, Osaka University

Yusuke Nonomura, Osaka University

Kenji Inoue, Osaka University

DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/SAINTW.2004.1268715

This paper proposes a framework of constructing appropriate logical clusters in a Grid environment for developing the protein surface retrieval system, which is a useful computational technology for protein functional analysis.

In this system, the retrieval is processed with two layers of parallel processing by dividing computing resources into logical clusters. The agency host submits the job of calculating similarity between an input protein and each active site in the database to every logical cluster in the Grid. Each logical cluster calculates the similarity using the MPI-based parallel program and returns the result to the agency host.

We also present a method of suggesting a better structure pattern of logical clusters based on the estimation of the processing time for surface comparison in each logical cluster. The experimental results prove the effectiveness of the proposed framework.

Citation:

Takenao Ohkawa, Yusuke Nonomura, Kenji Inoue, "Logical Cluster Construction in a Grid Environment for Similar Protein Retrieval," saint-w, pp.681, 2004 Symposium on Applications and the Internet-Workshops (SAINT 2004 Workshops), 2004

Peer Review Notice | Give Us Feedback

Usage of this product signifies your acceptance of the Terms of Use.