Drug Design on the Cell BroadBand Engine

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16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007)

Drug Design on the Cell BroadBand Engine (PDF)

Brasov, Romania

September 15-September 19

ISBN: 0-7695-2944-5

	ASCII Text	x
	Harald Servat, Cecilia Gonzalez, Xavier Aguilar, Daniel Cabrera, Daniel Jimenez, "Drug Design on the Cell BroadBand Engine," Parallel Architectures and Compilation Techniques, International Conference on, pp. 425, 16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007), 2007.

	BibTex	x
	@article{ 10.1109/PACT.2007.26, author = {Harald Servat and Cecilia Gonzalez and Xavier Aguilar and Daniel Cabrera and Daniel Jimenez}, title = {Drug Design on the Cell BroadBand Engine}, journal ={Parallel Architectures and Compilation Techniques, International Conference on}, volume = {0}, year = {2007}, issn = {1089-795X}, pages = {425}, doi = {http://doi.ieeecomputersociety.org/10.1109/PACT.2007.26}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Parallel Architectures and Compilation Techniques, International Conference on TI - Drug Design on the Cell BroadBand Engine SN - 1089-795X SP EP A1 - Harald Servat, A1 - Cecilia Gonzalez, A1 - Xavier Aguilar, A1 - Daniel Cabrera, A1 - Daniel Jimenez, PY - 2007 KW - null VL - 0 JA - Parallel Architectures and Compilation Techniques, International Conference on ER -

Harald Servat, Barcelona Supercomputing Center, Spain

Cecilia Gonzalez, Universitat Politecnica de Catalunya, Spain

Xavier Aguilar, Barcelona Supercomputing Center, Spain

Daniel Cabrera, Universitat Politecnica de Catalunya, Spain

Daniel Jimenez, Universitat Politecnica de Catalunya, Spain

DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/PACT.2007.26

We evaluate a well known protein docking application in the Bioinformatic field, Fourier Transform Docking (FTDock) [1], on a Blade with two 3.2GHz Cell Broadband Engine (BE) processor [2]. FTDock is a geometry complementary approximation of the protein docking problem, and uses 3D FFTs to reduce the complexity of the algorithm.

Citation:

Harald Servat, Cecilia Gonzalez, Xavier Aguilar, Daniel Cabrera, Daniel Jimenez, "Drug Design on the Cell BroadBand Engine," pact, pp.425, 16th International Conference on Parallel Architecture and Compilation Techniques (PACT 2007), 2007

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