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Building Innovative Representations of DNA Sequences to Facilitate Gene Finding
November/December 2005 (vol. 20 no. 6)
pp. 34-39
ASCII Text
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Jianbo Gao, Yinhe Cao, Yan Qi, Jing Hu, "Building Innovative Representations of DNA Sequences to Facilitate Gene Finding," IEEE Intelligent Systems, vol. 20, no. 6, pp. 34-39, November/December, 2005.
 
 
BibTex
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@article{ 10.1109/MIS.2005.100,
author = {Jianbo Gao and Yinhe Cao and Yan Qi and Jing Hu},
title = {Building Innovative Representations of DNA Sequences to Facilitate Gene Finding},
journal ={IEEE Intelligent Systems},
volume = {20},
number = {6},
issn = {1541-1672},
year = {2005},
pages = {34-39},
doi = {http://doi.ieeecomputersociety.org/10.1109/MIS.2005.100},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
x 
 
TY - MGZN
JO - IEEE Intelligent Systems
TI - Building Innovative Representations of DNA Sequences to Facilitate Gene Finding
IS - 6
SN - 1541-1672
SP34
EP39
EPD - 34-39
A1 - Jianbo Gao,
A1 - Yinhe Cao,
A1 - Yan Qi,
A1 - Jing Hu,
PY - 2005
KW - gene identification
KW - period-3
KW - recurrence time
KW - entropy
KW - fractal scaling breakdown
VL - 20
JA - IEEE Intelligent Systems
ER -
 
Jianbo Gao, University of Florida
Yinhe Cao, BioSieve
Yan Qi, Johns Hopkins University
Jing Hu, University of Florida
Genomic DNA sequences are outstanding examples of complex multiscale systems where randomness and structure coexist. One of the most important problems in genomics is gene finding. Good indices that accurately discriminate coding from noncoding regions are crucial elements of a successful gene identification algorithm. The authors describe two novel and effective codon indices by creatively representing DNA sequences which facilitates multiscale analysis of genome sequences. Their methods are unsupervised and nonparametric and are more accurate than conventional ways.

This article is part of a special issue on data mining in bioinformatics.

Index Terms:
gene identification, period-3, recurrence time, entropy, fractal scaling breakdown
Citation:
Jianbo Gao, Yinhe Cao, Yan Qi, Jing Hu, "Building Innovative Representations of DNA Sequences to Facilitate Gene Finding," IEEE Intelligent Systems, vol. 20, no. 6, pp. 34-39, Nov./Dec. 2005, doi:10.1109/MIS.2005.100
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