loading...
 This Article 
   
 Share 
   
 Bibliographic References 
   
 Add to: 
 
Digg
Furl
Spurl
Blink
Simpy
Google
Del.icio.us
Y!MyWeb
 
 Search 
   
16th International Conference on VLSI Design
A Run-Time Reconfigurable System for Gene-Sequence Searching
New Delhi, India
January 04-January 08
ISBN: 0-7695-1868-0
ASCII Text
x 
 
Kiran Puttegowda, William Worek, Nicholas Pappas, Anusha Dandapani, Peter Athanas, Allan Dickerman, "A Run-Time Reconfigurable System for Gene-Sequence Searching," VLSI Design, International Conference on, pp. 561, 16th International Conference on VLSI Design, 2003.
 
 
BibTex
x
 
@article{ 10.1109/ICVD.2003.1183193,
author = {Kiran Puttegowda and William Worek and Nicholas Pappas and Anusha Dandapani and Peter Athanas and Allan Dickerman},
title = {A Run-Time Reconfigurable System for Gene-Sequence Searching},
journal ={VLSI Design, International Conference on},
volume = {0},
year = {2003},
issn = {1063-9667},
pages = {561},
doi = {http://doi.ieeecomputersociety.org/10.1109/ICVD.2003.1183193},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
x 
 
TY - CONF
JO - VLSI Design, International Conference on
TI - A Run-Time Reconfigurable System for Gene-Sequence Searching
SN - 1063-9667
SP
EP
A1 - Kiran Puttegowda,
A1 - William Worek,
A1 - Nicholas Pappas,
A1 - Anusha Dandapani,
A1 - Peter Athanas,
A1 - Allan Dickerman,
PY - 2003
KW - null
VL - 0
JA - VLSI Design, International Conference on
ER -
 
Kiran Puttegowda, Virginia Polytechnic Institute and State University
William Worek, Virginia Polytechnic Institute and State University
Nicholas Pappas, Virginia Polytechnic Institute and State University
Anusha Dandapani, Virginia Polytechnic Institute and State University
Peter Athanas, Virginia Polytechnic Institute and State University
Allan Dickerman, Virginia Bioinformatics Institute
Advances in the field of bio-technology has led to an ever increasing demand for computational resources to rapidly search large databases of genetic information. Databases with billions of data elements are routinely compared and searched for matching and near-matching patterns. In this paper we present a system developed to search DNA sequence data using runtime reconfiguration of Field Programmable Gate Arrays (FPGAs). The system provides an order of magnitude increase in performance while reducing hardware complexity when compared to existing commercial systems.
Citation:
Kiran Puttegowda, William Worek, Nicholas Pappas, Anusha Dandapani, Peter Athanas, Allan Dickerman, "A Run-Time Reconfigurable System for Gene-Sequence Searching," vlsid, pp.561, 16th International Conference on VLSI Design, 2003
Usage of this product signifies your acceptance of the Terms of Use.