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2006 International Conference on Parallel Processing (ICPP'06)
Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications
Columbus, Ohio
August 14-August 18
ISBN: 0-7695-2636-5
ASCII Text
x 
 
Li Zhang, Manish Parashar, Emilio Gallicchio, Ronald M. Levy, "Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications," Parallel Processing, International Conference on, pp. 127-134, 2006 International Conference on Parallel Processing (ICPP'06), 2006.
 
 
BibTex
x
 
@article{ 10.1109/ICPP.2006.63,
author = {Li Zhang and Manish Parashar and Emilio Gallicchio and Ronald M. Levy},
title = {Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications},
journal ={Parallel Processing, International Conference on},
volume = {0},
year = {2006},
issn = {0190-3918},
pages = {127-134},
doi = {http://doi.ieeecomputersociety.org/10.1109/ICPP.2006.63},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
x 
 
TY - CONF
JO - Parallel Processing, International Conference on
TI - Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications
SN - 0190-3918
SP127
EP134
A1 - Li Zhang,
A1 - Manish Parashar,
A1 - Emilio Gallicchio,
A1 - Ronald M. Levy,
PY - 2006
KW - null
VL - 0
JA - Parallel Processing, International Conference on
ER -
 
Li Zhang, Rutgers University, USA
Manish Parashar, Rutgers University, USA
Emilio Gallicchio, Rutgers University, USA
Ronald M. Levy, Rutgers University, USA
This paper presents Salsa, a novel, decentralized and asynchronous realization of the "replica exchange" algorithm for simulating the structure, function, folding, and dynamics of proteins. Salsa provides a scalable communication and interaction substrate that presents a virtual shared space abstraction and enables the dynamic and asynchronous interactions required by the simulations to be simply and efficiently implemented. The design, implementation and experimental evaluation of Salsa and replica exchange-based simulations using Salsa are presented.
Citation:
Li Zhang, Manish Parashar, Emilio Gallicchio, Ronald M. Levy, "Salsa: Scalable Asynchronous Replica Exchange for Parallel Molecular Dynamics Applications," icpp, pp.127-134, 2006 International Conference on Parallel Processing (ICPP'06), 2006
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