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2009 International Conference on Information Management and Engineering
Taverna Workflow and Supporting Service for Single Nucleotide Polymorphisms Analysis
Kuala Lumpur, Malaysia
April 03-April 05
ISBN: 978-0-7695-3595-1
ASCII Text
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Kasikrit Damkliang, Pichaya Tandayya, Theerawut Phusantisampan, Unitsa Sangket, "Taverna Workflow and Supporting Service for Single Nucleotide Polymorphisms Analysis," Information Management and Engineering, International Conference on, pp. 27-31, 2009 International Conference on Information Management and Engineering, 2009.
 
 
BibTex
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@article{ 10.1109/ICIME.2009.38,
author = {Kasikrit Damkliang and Pichaya Tandayya and Theerawut Phusantisampan and Unitsa Sangket},
title = {Taverna Workflow and Supporting Service for Single Nucleotide Polymorphisms Analysis},
journal ={Information Management and Engineering, International Conference on},
volume = {0},
year = {2009},
isbn = {978-0-7695-3595-1},
pages = {27-31},
doi = {http://doi.ieeecomputersociety.org/10.1109/ICIME.2009.38},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Information Management and Engineering, International Conference on
TI - Taverna Workflow and Supporting Service for Single Nucleotide Polymorphisms Analysis
SN - 978-0-7695-3595-1
SP27
EP31
A1 - Kasikrit Damkliang,
A1 - Pichaya Tandayya,
A1 - Theerawut Phusantisampan,
A1 - Unitsa Sangket,
PY - 2009
KW - Taverna
KW - Workflow
KW - Web Service
KW - SNP
KW - Phylogenetics
VL - 0
JA - Information Management and Engineering, International Conference on
ER -
 
This paper describes a Taverna workflow environment with supporting web services for Single Nucleotide Polymorphisms (SNP) analysis of genes in shrimp. The workflow is used to investigate SNPs advantages for gene development. Our first workflow environment did not give satisfying results for the phylogenetic tree processes because the data flows between the web services would frequently time-out. Our solution employs local web service interfaces in a cluster, which Taverna accesses with the aid of Soaplab analysis tools. The cluster enables the modified workflow to rapidly process the large amount of sequenced data required by phylogenetic trees, and is highly reliable.
Index Terms:
Taverna, Workflow, Web Service, SNP, Phylogenetics
Citation:
Kasikrit Damkliang, Pichaya Tandayya, Theerawut Phusantisampan, Unitsa Sangket, "Taverna Workflow and Supporting Service for Single Nucleotide Polymorphisms Analysis," icime, pp.27-31, 2009 International Conference on Information Management and Engineering, 2009
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