2007 Data Compression Conference (DCC'07) Structure induction by lossless graph compression Snowbird, Utah March 27-March 29 ISBN: 0-7695-2791-4
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/DCC.2007.73
This work is motivated by the necessity to automate the discovery of structure in vast and evergrowing collection of relational data commonly represented as graphs, for example genomic networks. A novel algorithm, dubbed Graphitour, for structure induction by lossless graph compression is presented and illustrated by a clear and broadly known case of nested structure in a DNA molecule. This work extends to graphs some well established approaches to grammatical inference previously applied only to strings. The bottom-up graph compression problem is related to the maximum cardinality (non-bipartite) maximum cardinality matching problem. The algorithm accepts a variety of graph types including directed graphs and graphs with labeled nodes and arcs. The resulting structure could be used for representation and classification of graphs.
Citation:
Leonid Peshkin, "Structure induction by lossless graph compression," dcc, pp.53-62, 2007 Data Compression Conference (DCC'07), 2007 Usage of this product signifies your acceptance of the Terms of Use. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||