Flexible models of object classes, based on linear combinations of prototypical images, are capable of matching novel images of the same class and have been shown to be a powerful tool to solve several fundamental vision tasks such as recognition, synthesis and correspondence. The key problem in creating a specific flexible model is the computation of pixelwise correspondence between the prototypes, a task done until now in a semiautomatic way. In this paper we describe an algorithm that automatically bootstraps the correspondence between the prototypes. The algorithm -which can be used for 2D images as well as for 3D models-is shown to synthesize successfully a flexible model of frontal face images and a flexible model of handwritten digits.