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2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05)
MassTRAQ: a Fully Automated Tool for iTRAQ-labeled Protein Quantification
Stanford, California
August 08-August 11
ISBN: 0-7695-2442-7
Wen-Ting Lin, Institute of Information Science and Academia Sinica
Kuen-Pin Wu, Institute of Information Science and Academia Sinica
Wei-Neng Hung, Institute of Information Science and Academia Sinica
Yi-Hwa Yian, Institute of Information Science and Academia Sinica
Yet-Ran Chen, Institute of Chemistry, Academia Sinica
Yu-Ju Chen, Institute of Chemistry, Academia Sinica
Ting-Yi Sung, Institute of Information Science and Academia Sinica
Wen-Lian Hsu, Institute of Information Science, Academia Sinica

Mass spectrometry has emerged to be one of the most powerful high throughput techniques for protein analysis, and iTRAQ labeling technique is the one of the newest techniques for protein identification and quantification in this field. Here, we display a new protein abundance analysis software for iTRAQ technique called MassTRAQ that can analyze up to four sets of samples at the same time. We have analyzed two samples with expression level 1:1, and have the result of 1:1.007 with standard deviation 0.004. Thus, Mass- TRAQ provides a good interpretation of the protein analysis.

Citation:
Wen-Ting Lin, Kuen-Pin Wu, Wei-Neng Hung, Yi-Hwa Yian, Yet-Ran Chen, Yu-Ju Chen, Ting-Yi Sung, Wen-Lian Hsu, "MassTRAQ: a Fully Automated Tool for iTRAQ-labeled Protein Quantification," csbw, pp.157-158, 2005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05), 2005
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