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Sixth IEEE International Conference on Computer and Information Technology (CIT'06)
Whole Genome Alignment with BLAST on Grid Environment
Seoul, Korea
September 20-September 22
ISBN: 0-7695-2687-X
ASCII Text
x 
 
Min-Sung Kim, Choong-Hyun Sun, Jin-Ki Kim, Gwan-Su Yi, "Whole Genome Alignment with BLAST on Grid Environment," Computer and Information Technology, International Conference on, pp. 47, Sixth IEEE International Conference on Computer and Information Technology (CIT'06), 2006.
 
 
BibTex
x
 
@article{ 10.1109/CIT.2006.196,
author = {Min-Sung Kim and Choong-Hyun Sun and Jin-Ki Kim and Gwan-Su Yi},
title = {Whole Genome Alignment with BLAST on Grid Environment},
journal ={Computer and Information Technology, International Conference on},
volume = {0},
year = {2006},
isbn = {0-7695-2687-X},
pages = {47},
doi = {http://doi.ieeecomputersociety.org/10.1109/CIT.2006.196},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
x 
 
TY - CONF
JO - Computer and Information Technology, International Conference on
TI - Whole Genome Alignment with BLAST on Grid Environment
SN - 0-7695-2687-X
SP
EP
A1 - Min-Sung Kim,
A1 - Choong-Hyun Sun,
A1 - Jin-Ki Kim,
A1 - Gwan-Su Yi,
PY - 2006
KW - null
VL - 0
JA - Computer and Information Technology, International Conference on
ER -
 
Min-Sung Kim, Information and Communications University, Korea
Choong-Hyun Sun, Information and Communications University, Korea
Jin-Ki Kim, Information and Communications University, Korea
Gwan-Su Yi, Information and Communications University, Korea
BLAST is a widely used sequence alignment tool for comparing the similarity of DNA and protein. However, it is not commonly used in whole genome alignment because of its computational cost. We could solve the computational problem by using fragmentation based alignment on computing grid environment. The BLAST based genome alignment was sensitive in target sequence finding and flexible for the processing of alignment results. Therefore, various procedures could be tested to get more accurate whole genome alignment. The approach is used to align whole human chromosomes and mouse chromosomes. Compared to other genome alignment methods, we could get alignment list matched well with known synteny map data within reasonable time.
Citation:
Min-Sung Kim, Choong-Hyun Sun, Jin-Ki Kim, Gwan-Su Yi, "Whole Genome Alignment with BLAST on Grid Environment," cit, pp.47, Sixth IEEE International Conference on Computer and Information Technology (CIT'06), 2006
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