Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07) Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy Maribor, Slovenia June 20-June 22 ISBN: 0-7695-2905-4
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/CBMS.2007.60
Reverse engineering of gene regulatory networks from microarray time series data has been a challenging problem due to the limit of available data. In this paper, a new approach is proposed based on the concept of transfer entropy. Using this information theoretic measure, causal relations between pairs of genes are assessed to draw a causal network. A heuristic rule is then applied to differentiate direct and indirect causality. Simulation on a synthetic network showed that the transfer entropy can identify both linear and nonlinear causality. Application of the method in a biological data identified many causal interactions with biological information supports.
Citation:
Thai Quang Tung, Taewoo Ryu, Kwang H. Lee, Doheon Lee, "Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy," cbms, pp.383-388, Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07), 2007 Usage of this product signifies your acceptance of the Terms of Use. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||