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Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07)
Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy
Maribor, Slovenia
June 20-June 22
ISBN: 0-7695-2905-4
Thai Quang Tung, Korea Advanced Institute of Science and Technology, Korea
Taewoo Ryu, Korea Advanced Institute of Science and Technology, Korea
Kwang H. Lee, Korea Advanced Institute of Science and Technology, Korea
Doheon Lee, Korea Advanced Institute of Science and Technology, Korea
Reverse engineering of gene regulatory networks from microarray time series data has been a challenging problem due to the limit of available data. In this paper, a new approach is proposed based on the concept of transfer entropy. Using this information theoretic measure, causal relations between pairs of genes are assessed to draw a causal network. A heuristic rule is then applied to differentiate direct and indirect causality. Simulation on a synthetic network showed that the transfer entropy can identify both linear and nonlinear causality. Application of the method in a biological data identified many causal interactions with biological information supports.
Citation:
Thai Quang Tung, Taewoo Ryu, Kwang H. Lee, Doheon Lee, "Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy," cbms, pp.383-388, Twentieth IEEE International Symposium on Computer-Based Medical Systems (CBMS'07), 2007
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