Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs

B
BIBM
2008
2008 IEEE International Conference on Bioinformatics and Biomedicine
Abstract - Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs

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	Similar Articles Articles by Deepak Bandyopadhyay Articles by Jun (Luke) Huan Articles by Jinze Liu Articles by Jan Prins Articles by Jack Snoeyink Articles by Wei Wang Articles by Alexander Tropsha

2008 IEEE International Conference on Bioinformatics and Biomedicine

November 03-November 05

ISBN: 978-0-7695-3452-7

	ASCII Text	x
	Deepak Bandyopadhyay, Jun (Luke) Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha, "Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs," Bioinformatics and Biomedicine, IEEE International Conference on, pp. 199-206, 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008.

	BibTex	x
	@article{ 10.1109/BIBM.2008.84, author = {Deepak Bandyopadhyay and Jun (Luke) Huan and Jinze Liu and Jan Prins and Jack Snoeyink and Wei Wang and Alexander Tropsha}, title = {Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs}, journal ={Bioinformatics and Biomedicine, IEEE International Conference on}, volume = {0}, year = {2008}, isbn = {978-0-7695-3452-7}, pages = {199-206}, doi = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2008.84}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Bioinformatics and Biomedicine, IEEE International Conference on TI - Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs SN - 978-0-7695-3452-7 SP199 EP206 A1 - Deepak Bandyopadhyay, A1 - Jun (Luke) Huan, A1 - Jinze Liu, A1 - Jan Prins, A1 - Jack Snoeyink, A1 - Wei Wang, A1 - Alexander Tropsha, PY - 2008 KW - packing motifs KW - family-specific KW - structural motifs KW - protein function inference KW - protein function prediction KW - frequent subgraph mining KW - enrichment KW - functional neighbors KW - remote similarity KW - remote homology VL - 0 JA - Bioinformatics and Biomedicine, IEEE International Conference on ER -

DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/BIBM.2008.84

We describe a new approach for inferring the functional relationships between non-homologous protein families by looking at statistical enrichment of alternative function predictions in classification hierarchies such as Gene Ontology (GO) and Structural Classification of Proteins (SCOP).

Index Terms:

packing motifs, family-specific, structural motifs, protein function inference, protein function prediction, frequent subgraph mining, enrichment, functional neighbors, remote similarity, remote homology

Citation:

Deepak Bandyopadhyay, Jun (Luke) Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha, "Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs," bibm, pp.199-206, 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

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