loading...
 This Article 
   
 Share 
   
 Bibliographic References 
   
 Add to: 
 
Digg
Furl
Spurl
Blink
Simpy
Google
Del.icio.us
Y!MyWeb
 
 Search 
   
2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007)
GenMiner: Mining Informative Association Rules from Genomic Data
Fremont, California
November 02-November 04
ISBN: 0-7695-3031-1
GENMINER is a smart adaptation of closed itemsets based association rules extraction to genomic data. It takes advantage of the novel NORDI discretization method and of the CLOSE [27] algorithm to efficiently generate min- imal non-redundant association rules. GENMINER facili- tates the integration of numerous sources of biological in- formation such as gene expressions and annotations, and can tacitly integrate qualitative information on biological conditions (age, sex, etc.). We validated this approach ana- lyzing the microarray datasets used by Eisen et al. [10] with several sources of biological annotations. Extracted asso- ciations revealed significant co-annotated and co-expressed gene patterns, showing important biological relationships between genes and their features. Several of these relation- ships are supported by recent biological literature.
Citation:
Ricardo Martinez, Claude Pasquier, Nicolas Pasquier, "GenMiner: Mining Informative Association Rules from Genomic Data," bibm, pp.15-22, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007), 2007
Usage of this product signifies your acceptance of the Terms of Use.