Systolic Filter for Fast DNA Similarity Search

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	Similar Articles Articles by Pascale Guerdoux-Jamet Articles by Dominique Lavenier

1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95)

Strasbourg, France

July 24-July 26

ISBN: 0-8186-7109-2

	ASCII Text	x
	Pascale Guerdoux-Jamet, Dominique Lavenier, "Systolic Filter for Fast DNA Similarity Search," Application-Specific Systems, Architectures and Processors, IEEE International Conference on, pp. 145, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995.

	BibTex	x
	@article{ 10.1109/ASAP.1995.522918, author = {Pascale Guerdoux-Jamet and Dominique Lavenier}, title = {Systolic Filter for Fast DNA Similarity Search}, journal ={Application-Specific Systems, Architectures and Processors, IEEE International Conference on}, volume = {0}, year = {1995}, issn = {1063-6862}, pages = {145}, doi = {http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.522918}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Application-Specific Systems, Architectures and Processors, IEEE International Conference on TI - Systolic Filter for Fast DNA Similarity Search SN - 1063-6862 SP EP A1 - Pascale Guerdoux-Jamet, A1 - Dominique Lavenier, PY - 1995 KW - DNA KW - biological sequences KW - FPGA KW - systolic filter VL - 0 JA - Application-Specific Systems, Architectures and Processors, IEEE International Conference on ER -

Pascale Guerdoux-Jamet, IRISA

Dominique Lavenier, IRISA

DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.522918

This paper presents a systolic filter for speeding up the scan of DNA databases. The filter acts as a co-processor which performs the more intensive computations occurring during the process. Our Validation, based on a FPGA prototype board tightly connected to a workstation, has shown that the filter may boost the performance of the machine by a factor ranging from 50 to 400 over current workstations.

Index Terms:

DNA, biological sequences, FPGA, systolic filter

Citation:

Pascale Guerdoux-Jamet, Dominique Lavenier, "Systolic Filter for Fast DNA Similarity Search," asap, pp.145, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995

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